21336_YPL248C (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 21336_YPL248C T390815_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GAL4
M01599_2.00 		Saccharomyces cerevisiae
NYCGGVN
NBCCGRN		 PBM
Zhu et al.(2009)
Gal4 		0.683 1.000
GAL4
M07559_2.00 		Saccharomyces cerevisiae
GGANVRCW
WGYBNTCC		 ChIP-exo
Rhee et al.(2011)
Gal4_1 		0.683 1.000
GAL4
M07560_2.00 		Saccharomyces cerevisiae
GGRAAARGGTC
GACCYTTTYCC		 ChIP-exo
Rhee et al.(2011)
Gal4_2 		0.683 1.000
GAL4
M07561_2.00 		Saccharomyces cerevisiae
AGAACAA
TTGTTCT		 ChIP-exo
Rhee et al.(2011)
Gal4_3 		0.683 1.000
GAL4
M08698_2.00 		Saccharomyces cerevisiae
CGGVSNNVTNYNSNCCG
CGGNSNRNABNNSBCCG		 Misc
DeBoer et al.(2011)
YPL248C_1510 		0.683 1.000
GAL4
M11487_2.00 		Saccharomyces cerevisiae
BYWCGGWSVAVWGHBVBCCGDDV
BHHCGGVBVDCWBTBSWCCGWRV		 Transfac
Matys et al.(2006)
F$GAL4_01 		0.683 1.000
GAL4
M11488_2.00 		Saccharomyces cerevisiae
HKYWCGGHVVRVWGHBNBCCGD
HCGGVNVDCWBYBBDCCGWRMD		 Transfac
Matys et al.(2006)
F$GAL4_C 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
21336_YPL248C Zinc cluster 22 60

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GAL4 Saccharomyces cerevisiae YPL248C D 0.683
21920_YPL248C Saccharomyces paradoxus 21920_YPL248C I 0.683
24374_YPL248C Saccharomyces bayanus 24374_YPL248C I 0.667
SU7_3455 Saccharomyces arboricola SU7_3455 I 0.660
SKUD_900401 Saccharomyces kudriavzevii SKUD_900401 I 0.646
NCAS_0G01100 Naumovozyma castellii NCAS_0G01100 I 0.629
Scas_Contig699.7 Saccharomyces castellii Scas_Contig699.7 I 0.629
TBLA_0G01800 Tetrapisispora blattae TBLA_0G01800 I 0.620
KAFR_0F01040 Kazachstania africana KAFR_0F01040 I 0.606
TPHA_0H01980 Tetrapisispora phaffii TPHA_0H01980 I 0.605
SAKL0A02860g Lachancea kluyveri SAKL0A02860g I 0.588
ZBAI_04658 Zygosaccharomyces bailii ZBAI_04658 I 0.580
ZBAI_06699 Zygosaccharomyces bailii ZBAI_06699 I 0.580
NDAI_0F01220 Naumovozyma dairenensis NDAI_0F01220 I 0.578
NCAS_0D04190 Naumovozyma castellii NCAS_0D04190 I 0.573
NDAI_0I00740 Naumovozyma dairenensis NDAI_0I00740 I 0.573
Scas_Contig720.58 Saccharomyces castellii Scas_Contig720.58 I 0.573
GNLVRS01_PISO0F02711g Millerozyma farinosa GNLVRS01_PISO0F02711g I 0.569
GNLVRS01_PISO0J02671g Millerozyma farinosa GNLVRS01_PISO0J02671g I 0.569
AWRI1499_3090 Brettanomyces bruxellensis AWRI1499_3090 I 0.565
KNAG_0D00690 Kazachstania naganishii KNAG_0D00690 I 0.541
CLUG_00203 Candida lusitaniae CLUG_00203 I 0.540
CLUG_00203 Clavispora lusitaniae CLUG_00203 I 0.540
DEHA2F03366g Debaryomyces hansenii DEHA2F03366g I 0.540
PAS_FragB_0075 Komagataella pastoris PAS_FragB_0075 I 0.540
XP_002490850.1 Pichia pastoris XP_002490850.1 I 0.540