PGSC0003DMG400030228 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400030228 T004487_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.705 0.843
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.695 0.863
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400077702 AP2 5 56

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004632 Ricinus communis 29848.m004632 I 0.713
Bo9g011380 Brassica oleracea Bo9g011380 I 0.754
Bo9g171490 Brassica oleracea Bo9g171490 I 0.705
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.705
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.690
Bra008985 Brassica rapa Bra008985 I 0.705
Bra036543 Brassica rapa Bra036543 I 0.757
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.700
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.700
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.705
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.705
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.713
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.713
cassava40012.m1 Manihot esculenta cassava40012.m1 I
Ca_01764 Cicer arietinum Ca_01764 I 0.712
Ca_09050 Cicer arietinum Ca_09050 I 0.710
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.710
Cla021283 Citrullus lanatus Cla021283 I 0.735
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.735
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.715
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.709
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.713
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.713
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.713
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.713
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.713
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.786
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.713
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.678
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.678
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.778
MDP0000178263 Malus domestica MDP0000178263 I 0.712
MDP0000287350 Malus domestica MDP0000287350 I 0.712
mgf017744m Mimulus guttatus mgf017744m I 0.717
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.710
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.713
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.710
Pm004616 Prunus mume Pm004616 I 0.712
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.713
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.713
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.712
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.700
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.713
SHN2 Arabidopsis thaliana AT5G11190 D 0.705
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.703
SHN3 Arabidopsis thaliana AT5G25390 I 0.700
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.705
TCM_037007 Theobroma cacao TCM_037007 I 0.712
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.753
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.698