CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SHN2
(
Arabidopsis lyrata
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
fgenesh1_pm.C_scaffold_6002026
T001631_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.732
0.922
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_6002026
AP2
5
56
KKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAILMNGQ
Links
Other
AP2
family TFs
Other
Arabidopsis lyrata
TFs
51 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SHN3
Arabidopsis thaliana
AT5G25390
I
0.805
Cagra.1110s0005
Capsella grandiflora
Cagra.1110s0005
I
0.750
Carubv10002040m.g
Capsella rubella
Carubv10002040m.g
I
0.750
Cucsa.310360
Cucumis sativus
Cucsa.310360
I
0.741
Cla021283
Citrullus lanatus
Cla021283
I
0.741
cassava10120.m1
Manihot esculenta
cassava10120.m1
I
0.740
29848.m004632
Ricinus communis
29848.m004632
I
0.740
POPTR_0018s01680
Populus trichocarpa
POPTR_0018s01680
I
0.740
Bostr.29827s0278
Boechera stricta
Bostr.29827s0278
I
0.740
Gorai.010G114800
Gossypium raimondii
Gorai.010G114800
I
0.740
Gorai.004G292600
Gossypium raimondii
Gorai.004G292600
I
0.740
POPTR_0006s26990
Populus trichocarpa
POPTR_0006s26990
I
0.740
LjSGA_019003.1
Lotus japonicus
LjSGA_019003.1
I
0.740
SapurV1A.0192s0020
Salix purpurea
SapurV1A.0192s0020
I
0.740
cassava30505.valid.m1
Manihot esculenta
cassava30505.valid.m1
I
0.740
GLYMA17G31900
Glycine max
GLYMA17G31900
I
0.740
GLYMA06G07240
Glycine max
GLYMA06G07240
I
0.740
GLYMA04G07140
Glycine max
GLYMA04G07140
I
0.740
MTR_3g107380
Medicago truncatula
MTR_3g107380
I
0.740
Ca_01764
Cicer arietinum
Ca_01764
I
0.739
TCM_037007
Theobroma cacao
TCM_037007
I
0.739
Pm004616
Prunus mume
Pm004616
I
0.739
MDP0000178263
Malus domestica
MDP0000178263
I
0.739
MDP0000287350
Malus domestica
MDP0000287350
I
0.739
PRUPE_ppa023908mg
Prunus persica
PRUPE_ppa023908mg
I
0.739
Ciclev10009526m.g
Citrus clementina
Ciclev10009526m.g
I
0.736
orange1.1g028913m.g
Citrus sinensis
orange1.1g028913m.g
I
0.736
gene11636-v1.0-hybrid
Fragaria vesca
gene11636-v1.0-hybrid
I
0.735
MTR_1g012470
Medicago truncatula
MTR_1g012470
I
0.734
Ca_09050
Cicer arietinum
Ca_09050
I
0.734
SHN2
Arabidopsis thaliana
AT5G11190
D
0.732
Bo9g171490
Brassica oleracea
Bo9g171490
I
0.732
Gorai.001G033200
Gossypium raimondii
Gorai.001G033200
I
0.732
Carubv10003042m.g
Capsella rubella
Carubv10003042m.g
I
0.732
SHN3
Arabidopsis lyrata
Al_scaffold_0006_1028
I
0.732
Bostr.23997s0014
Boechera stricta
Bostr.23997s0014
I
0.732
Carubv10003050m.g
Capsella rubella
Carubv10003050m.g
I
0.732
Bra008985
Brassica rapa
Bra008985
I
0.732
evm.TU.supercontig_259.2
Carica papaya
evm.TU.supercontig_259.2
I
0.730
VIT_04s0008g05440
Vitis vinifera
VIT_04s0008g05440
I
0.725
Lus10019414.g
Linum usitatissimum
Lus10019414.g
I
0.723
SapurV1A.0043s0690
Salix purpurea
SapurV1A.0043s0690
I
0.722
Bra036543
Brassica rapa
Bra036543
I
0.720
Lus10002912.g
Linum usitatissimum
Lus10002912.g
I
0.719
Lus10002015.g
Linum usitatissimum
Lus10002015.g
I
0.719
Gorai.011G082900
Gossypium raimondii
Gorai.011G082900
I
0.718
Thhalv10005514m.g
Eutrema salsugineum
Thhalv10005514m.g
I
0.715
Bo9g011380
Brassica oleracea
Bo9g011380
I
0.710
PGSC0003DMG400030228
Solanum tuberosum
PGSC0003DMG400030228
I
0.703
mgf017744m
Mimulus guttatus
mgf017744m
I
0.703
Bo7g096000
Brassica oleracea
Bo7g096000
N
0.680