Carubv10003050m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10003050m.g T007824_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.794 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003050m AP2 5 56

Links

Other AP2 family TFs
Other Capsella rubella TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.794
SHN2 Arabidopsis thaliana AT5G11190 D 0.794
Bo9g171490 Brassica oleracea Bo9g171490 I 0.794
Bra008985 Brassica rapa Bra008985 I 0.794
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.794
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.794
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.787
TCM_037007 Theobroma cacao TCM_037007 I 0.787
Ca_01764 Cicer arietinum Ca_01764 I 0.787
Pm004616 Prunus mume Pm004616 I 0.787
MDP0000178263 Malus domestica MDP0000178263 I 0.787
MDP0000287350 Malus domestica MDP0000287350 I 0.787
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.786
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.786
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.786
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.786
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.786
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.786
29848.m004632 Ricinus communis 29848.m004632 I 0.786
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.786
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.786
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.786
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.786
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.786
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.786
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.784
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.783
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.783
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.781
Ca_09050 Cicer arietinum Ca_09050 I 0.781
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.779
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.776
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.773
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.773
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.772
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.768
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.763
mgf017744m Mimulus guttatus mgf017744m I 0.751
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.743
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.743
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I 0.734
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.732
SHN3 Arabidopsis thaliana AT5G25390 I 0.729
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.728
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.720
Cla021283 Citrullus lanatus Cla021283 I 0.711
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.711
cassava40012.m1 Manihot esculenta cassava40012.m1 I 0.710
Bra036543 Brassica rapa Bra036543 I 0.709
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.705
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.704
Bo9g011380 Brassica oleracea Bo9g011380 I 0.699
Lus10041023.g Linum usitatissimum Lus10041023.g I 0.678