CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

VIT_16s0013g01110 *(Vitis vinifera)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	VIT_16s0013g01110	T006126_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.825	0.902
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.821	0.824
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.821	0.824
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.821	0.824
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.811	0.863
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.811	0.863
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.811	0.863
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.811	0.745
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.811	0.745
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.809	0.863
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.786	0.804
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.763	0.745
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.753	0.804
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.753	0.804
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.743	0.784
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.739	0.745
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.728	0.745
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.727	0.804
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.727	0.804
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.726	0.784
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.726	0.784
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.726	0.784
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.726	0.784
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.726	0.784
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.718	0.765
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.718	0.765
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.710	0.686
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.709	0.784
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.709	0.784
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.709	0.784
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.698	0.725
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.698	0.725
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.698	0.725
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.698	0.627
ERF086 M06663_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYHD	HDRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) PUCHI_col_a	0.693	0.647
ERF086 M06664_2.00	Arabidopsis thaliana	NNNNHDHCKCCGCCGYHDHHDHNNN	NNNDHDDHDRCGGCGGMGDHDNNNN	Dap-seq OMalley et al.(2016) PUCHI_colamp_a	0.693	0.647
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.693	0.627
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.691	0.706
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.691	0.686
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.691	0.686
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.691	0.686
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.691	0.686
ERF098 M01618_2.00	Arabidopsis thaliana	NNGCCGNC	GNCGGCNN	PBM Weirauch et al.(2014) pTH8259	0.689	0.706
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.688	0.686
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.687	0.667
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.682	0.647
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.680	0.725
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
VIT_16s0013g01110.t01	AP2	81	133	RHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGS

Links
Other AP2 family TFs
Other *Vitis vinifera* TFs

1484 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAH77429	Xenopus laevis	AAH77429	I
Aan_R002310	Calypte anna	Aan_R002310	I
Afo_R005722	Aptenodytes forsteri	Afo_R005722	I
Brh_R003908	Buceros rhinoceros	Brh_R003908	I
ENSAMEG00000004992	Ailuropoda melanoleuca	ENSAMEG00000004992	I
ENSAMXG00000007136	Astyanax mexicanus	ENSAMXG00000007136	I
ENSBTAP00000010035-D1	Bos grunniens	ENSBTAP00000010035-D1	I
ENSCHOG00000005563	Choloepus hoffmanni	ENSCHOG00000005563	I
ENSCPOG00000021608	Cavia porcellus	ENSCPOG00000021608	I
ENSCSAG00000014961	Chlorocebus sabaeus	ENSCSAG00000014961	I
ENSFALG00000005181	Ficedula albicollis	ENSFALG00000005181	I
ENSLACG00000000288	Latimeria chalumnae	ENSLACG00000000288	I
ENSLACG00000003453	Latimeria chalumnae	ENSLACG00000003453	I
ENSLOCG00000003237	Lepisosteus oculatus	ENSLOCG00000003237	I
ENSMMUG00000000162	Macaca mulatta	ENSMMUG00000000162	I
ENSNLEG00000012946	Nomascus leucogenys	ENSNLEG00000012946	I
ENSOARG00000003516	Ovis aries	ENSOARG00000003516	I
ENSP00000254250	Macaca fascicularis	ENSP00000254250	I
ENSPANG00000007346	Papio anubis	ENSPANG00000007346	I
ENSPFOG00000004261	Poecilia formosa	ENSPFOG00000004261	I
ENSSSCG00000027223	Sus scrofa	ENSSSCG00000027223	I
ENSSTOG00000023122	Ictidomys tridecemlineatus	ENSSTOG00000023122	I
ENSTSYG00000006585	Tarsius syrichta	ENSTSYG00000006585	I
Pvit_16121	Pogona vitticeps	Pvit_16121	I
Tal_R008759	Tyto alba	Tal_R008759	I
THAP1	Erinaceus europaeus	ENSEEUG00000003332	I
Thap1	Rattus norvegicus	ENSRNOG00000056956	I
THAP1	Tursiops truncatus	ENSTTRG00000008823	I
THAP1	Vicugna pacos	ENSVPAG00000001157	I
THAP1	Gorilla gorilla	ENSGGOG00000022708	I
THAP1	Dasypus novemcinctus	ENSDNOG00000047233	I
THAP1	Callithrix jacchus	ENSCJAG00000003466	I
THAP1	Canis familiaris	ENSCAFG00000005418	I
THAP1	Bos taurus	ENSBTAG00000007629	I
thap1	Xenopus tropicalis	XB-GENE-1008758	I
THAP1	Pan troglodytes	ENSPTRG00000020211	I
THAP1	Gallus gallus	ENSGALG00000015385	I
thap1	Gasterosteus aculeatus	ENSGACG00000018371	I
THAP1	Homo sapiens	ENSG00000131931	D
THAP1	Loxodonta africana	ENSLAFG00000003647	I
THAP1	Felis catus	ENSFCAG00000027837	I
THAP1	Myotis lucifugus	ENSMLUG00000003837	I
THAP1	Echinops telfairi	ENSETEG00000018764	I
THAP1	Monodelphis domestica	ENSMODG00000010093	I
Thap1	Mus musculus	ENSMUSG00000037214	I
THAP1	Anolis carolinensis	ENSACAG00000005705	I
THAP1	Ornithorhynchus anatinus	ENSOANG00000000699	I
THAP1	Oryctolagus cuniculus	ENSOCUG00000001391	I
THAP1	Otolemur garnettii	ENSOGAG00000002708	I
thap1	Oryzias latipes	ENSORLG00000018779	I
THAP1	Pteropus vampyrus	ENSPVAG00000013496	I
thap1.L	Xenopus laevis	XB-GENE-1008764	I

VIT_16s0013g01110 (Vitis vinifera) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1484 Related TFs

VIT_16s0013g01110 **(Vitis vinifera)
AP2**