Cla020002 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla020002 T006508_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.817 0.979
OS05G0497200
M01636_2.00 		Oryza sativa
CGSCGCCR
YGGCGSCG		 PBM
Weirauch et al.(2014)
pTH8640 		0.747 0.851
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.734 0.787
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.734 0.787
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.734 0.787
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.726 0.809
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.726 0.809
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.719 0.787
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.719 0.787
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.712 0.787
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.697 0.787
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.697 0.787
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.697 0.787
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.689 0.766
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla020002 AP2 7 58

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

400 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29333.m001059 Ricinus communis 29333.m001059 N
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N
Carubv10001713m.g Capsella rubella Carubv10001713m.g N
Carubv10014086m.g Capsella rubella Carubv10014086m.g N
cassava41983.valid.m1 Manihot esculenta cassava41983.valid.m1 N
Ca_00866 Cicer arietinum Ca_00866 N
Ca_14455 Cicer arietinum Ca_14455 N
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N
Cla017884 Citrullus lanatus Cla017884 N
Cucsa.241980 Cucumis sativus Cucsa.241980 N
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N
GLYMA02G35190 Glycine max GLYMA02G35190 N
GLYMA03G36140 Glycine max GLYMA03G36140 N
GLYMA10G10240 Glycine max GLYMA10G10240 N
GLYMA19G38800 Glycine max GLYMA19G38800 N
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N
Lus10013592.g Linum usitatissimum Lus10013592.g N
Lus10021259.g Linum usitatissimum Lus10021259.g N
MDP0000129029 Malus domestica MDP0000129029 N
MDP0000375005 Malus domestica MDP0000375005 N
MDP0000588222 Malus domestica MDP0000588222 N
MDP0000785523 Malus domestica MDP0000785523 N
MDP0000948645 Malus domestica MDP0000948645 N
mgf025421m Mimulus guttatus mgf025421m N
MTR_1g056530 Medicago truncatula MTR_1g056530 N
MTR_7g106450 Medicago truncatula MTR_7g106450 N
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N
NFYA10 Arabidopsis thaliana AT5G06510 N
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N
PGSC0003DMG400021365 Solanum tuberosum PGSC0003DMG400021365 N
PK26326.1 Cannabis sativa PK26326.1 N
Pm026038 Prunus mume Pm026038 N
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N
Solyc01g006930.2 Solanum lycopersicum Solyc01g006930.2 N
TCM_022984 Theobroma cacao TCM_022984 N
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N