Cagra.1968s0069 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.1968s0069 T007752_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.842 1.000
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.842 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1968s0069.1.p AP2 43 94

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29661.m000923 Ricinus communis 29661.m000923 N
Aquca_060_00005 Aquilegia coerulea Aquca_060_00005 N
cassava32963.m1 Manihot esculenta cassava32963.m1 N
cassava7505.valid.m1 Manihot esculenta cassava7505.valid.m1 N
Ca_02226 Cicer arietinum Ca_02226 N
Ca_09352 Cicer arietinum Ca_09352 N
chr2.CM0168.260.nc Lotus japonicus chr2.CM0168.260.nc N
Ciclev10025470m.g Citrus clementina Ciclev10025470m.g N
Cla014238 Citrullus lanatus Cla014238 N
Cucsa.103160 Cucumis sativus Cucsa.103160 N
Eucgr.I00704 Eucalyptus grandis Eucgr.I00704 N
evm.TU.supercontig_6.17 Carica papaya evm.TU.supercontig_6.17 N
gene05757-v1.0-hybrid Fragaria vesca gene05757-v1.0-hybrid N
GLYMA01G40180 Glycine max GLYMA01G40180 N
GLYMA05G22460 Glycine max GLYMA05G22460 N
GLYMA11G05110 Glycine max GLYMA11G05110 N
GLYMA17G17400 Glycine max GLYMA17G17400 N
Gorai.003G030400 Gossypium raimondii Gorai.003G030400 N
Gorai.007G223500 Gossypium raimondii Gorai.007G223500 N
Gorai.008G083500 Gossypium raimondii Gorai.008G083500 N
MDP0000165587 Malus domestica MDP0000165587 N
MDP0000171602 Malus domestica MDP0000171602 N
MDP0000687763 Malus domestica MDP0000687763 N
MDP0000822651 Malus domestica MDP0000822651 N
MDP0000840369 Malus domestica MDP0000840369 N
MTR_4g097080 Medicago truncatula MTR_4g097080 N
MTR_5g015490 Medicago truncatula MTR_5g015490 N
orange1.1g035867m.g Citrus sinensis orange1.1g035867m.g N
PGSC0003DMG400021444 Solanum tuberosum PGSC0003DMG400021444 N
PK04147.1 Cannabis sativa PK04147.1 N
Pm002381 Prunus mume Pm002381 N
PRUPE_ppa004454mg Prunus persica PRUPE_ppa004454mg N
SapurV1A.0461s0030 Salix purpurea SapurV1A.0461s0030 N
SHR Populus trichocarpa POPTR_0012s06430 N
SHR Vitis vinifera VIT_07s0129g00030 N
Solyc02g092370.1 Solanum lycopersicum Solyc02g092370.1 N