evm.TU.supercontig_25.116 (Carica papaya)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 evm.TU.supercontig_25.116 T008292_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.878 0.865
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.878 0.865
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.874 0.875
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.874 0.875
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.863 0.865
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.863 0.865
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.816 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.816 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_25.116 AP2 256 313
evm.model.supercontig_25.116 AP2 355 407

Links

Other AP2 family TFs
Other Carica papaya TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29736.m002013 Ricinus communis 29736.m002013 I
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I
BGIOSGA026188 Oryza indica BGIOSGA026188 I
Bo2g136560 Brassica oleracea Bo2g136560 I
Bo5g019500 Brassica oleracea Bo5g019500 I
Bo7g080730 Brassica oleracea Bo7g080730 I
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I
Bra019658 Brassica rapa Bra019658 I
Bra024804 Brassica rapa Bra024804 I
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I
Carubv10011707m.g Capsella rubella Carubv10011707m.g I
Carubv10017119m.g Capsella rubella Carubv10017119m.g I
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I
cassava39089.m1 Manihot esculenta cassava39089.m1 I
Ca_18779 Cicer arietinum Ca_18779 I
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I
Cla010333 Citrullus lanatus Cla010333 I
Cucsa.285270 Cucumis sativus Cucsa.285270 I
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I
GLYMA01G05190 Glycine max GLYMA01G05190 I
GLYMA02G02310 Glycine max GLYMA02G02310 I
GLYMA08G40950 Glycine max GLYMA08G40950 I
GLYMA18G16040 Glycine max GLYMA18G16040 I
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I
GRMZM2G064630 Zea mays GRMZM2G064630 I
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I
GSMUA_Achr6G10650_001 Musa acuminata GSMUA_Achr6G10650_001 I
Lus10030494.g Linum usitatissimum Lus10030494.g I
MDP0000165523 Malus domestica MDP0000165523 I
MDP0000210970 Malus domestica MDP0000210970 I
mgf009409m Mimulus guttatus mgf009409m I
MTR_5g038910 Medicago truncatula MTR_5g038910 I
MTR_8g468380 Medicago truncatula MTR_8g468380 I
MYB124 Arabidopsis thaliana AT1G14350 D
MYB88 Arabidopsis thaliana AT2G02820 D
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I
OB07G28520 Oryza brachyantha OB07G28520 I
OBART07G22930 Oryza barthii OBART07G22930 I
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I
OPUNC07G21540 Oryza punctata OPUNC07G21540 I
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I
OS07G0627300 Oryza sativa OS07G0627300 I
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I
Pavir.J36475 Panicum virgatum Pavir.J36475 I
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I
PK05123.1 Cannabis sativa PK05123.1 I
Pm006532 Prunus mume Pm006532 I
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I
Sb02g040050 Sorghum bicolor Sb02g040050 I
Si029124m.g Setaria italica Si029124m.g I
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I
TCM_011776 Theobroma cacao TCM_011776 I
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I