Pavir.J26231 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J26231 T009613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.773 0.900
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.760 0.860
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.741 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26231.1.p AP2 13 64

Links

Other AP2 family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28650.m000191 Ricinus communis 28650.m000191 N 0.000
Bo01118s010 Brassica oleracea Bo01118s010 N 0.000
Bo4g065860 Brassica oleracea Bo4g065860 N 0.000
Bo4g168030 Brassica oleracea Bo4g168030 N 0.000
Bostr.25219s0207 Boechera stricta Bostr.25219s0207 N 0.000
Bostr.27991s0167 Boechera stricta Bostr.27991s0167 N 0.000
Bra028390 Brassica rapa Bra028390 N 0.000
Bra030688 Brassica rapa Bra030688 N 0.000
Bra035653 Brassica rapa Bra035653 N 0.000
Cagra.1671s0373 Capsella grandiflora Cagra.1671s0373 N 0.000
Cagra.3264s0006 Capsella grandiflora Cagra.3264s0006 N 0.000
Carubv10008391m.g Capsella rubella Carubv10008391m.g N 0.000
Carubv10024938m.g Capsella rubella Carubv10024938m.g N 0.000
cassava19450.valid.m1 Manihot esculenta cassava19450.valid.m1 N 0.000
Ca_16678 Cicer arietinum Ca_16678 N 0.000
evm.TU.supercontig_81.124 Carica papaya evm.TU.supercontig_81.124 N 0.000
evm.TU.supercontig_81.126 Carica papaya evm.TU.supercontig_81.126 N 0.000
Pm000719 Prunus mume Pm000719 N 0.000
POPTR_0001s24850 Populus trichocarpa POPTR_0001s24850 N 0.000
POPTR_0009s03790 Populus trichocarpa POPTR_0009s03790 N 0.000
PRUPE_ppa003149mg Prunus persica PRUPE_ppa003149mg N 0.000
SapurV1A.0040s0470 Salix purpurea SapurV1A.0040s0470 N 0.000
SapurV1A.0041s0160 Salix purpurea SapurV1A.0041s0160 N 0.000
SapurV1A.4599s0010 Salix purpurea SapurV1A.4599s0010 N 0.000
SCL14 Arabidopsis thaliana AT1G07530 N 0.000
SCL33 Arabidopsis thaliana AT2G29060 N 0.000
Thhalv10006868m.g Eutrema salsugineum Thhalv10006868m.g N 0.000
Thhalv10016312m.g Eutrema salsugineum Thhalv10016312m.g N 0.000