13508_YKL043W (Saccharomyces mikatae)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 13508_YKL043W T013951_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHD1
M00006_2.00 		Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC		 PBM
Badis et al.(2008)
PHD1_4559 		0.842 0.976
PHD1
M01516_2.00 		Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN		 PBM
Zhu et al.(2009)
Phd1 		0.842 0.976
PHD1
M07437_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1 		0.842 0.976
PHD1
M07547_2.00 		Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB		 ChIP-exo
Rhee et al.(2011)
Phd1_1 		0.842 0.976
PHD1
M07548_2.00 		Saccharomyces cerevisiae
MYGCRC
GYGCRK		 ChIP-exo
Rhee et al.(2011)
Phd1_2 		0.842 0.976
PHD1
M07549_2.00 		Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA		 ChIP-exo
Rhee et al.(2011)
Phd1_3 		0.842 0.976
PHD1
M08475_2.00 		Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS		 Misc
DeBoer et al.(2011)
YKL043W_393 		0.842 0.976
PHD1
M08476_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 Misc
DeBoer et al.(2011)
YKL043W_554 		0.842 0.976
SOK2
M00007_2.00 		Saccharomyces cerevisiae
NCMTGCAKGNN
NNCMTGCAKGN		 PBM
Badis et al.(2008)
SOK2_4560 		0.655 0.821
SOK2
M07438_2.00 		Saccharomyces cerevisiae
NNBMTGCAKNN
NNMTGCAKVNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1 		0.655 0.821
SOK2
M08477_2.00 		Saccharomyces cerevisiae
HNBCTGCR
YGCAGVND		 Misc
DeBoer et al.(2011)
YMR016C_404 		0.655 0.821
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13508_YKL043W APSES 199 287

Links

Other APSES family TFs
Other Saccharomyces mikatae TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29843.m000288 Ricinus communis 29843.m000288 N
Aquca_018_00160 Aquilegia coerulea Aquca_018_00160 N
BGIOSGA029516 Oryza indica BGIOSGA029516 N
BRADI1G34320 Brachypodium distachyon BRADI1G34320 N
BRADI4G34050 Brachypodium distachyon BRADI4G34050 N
Ciclev10008843m.g Citrus clementina Ciclev10008843m.g N
F775_07408 Aegilops tauschii F775_07408 N
GRMZM2G025095 Zea mays GRMZM2G025095 N
GRMZM2G168269 Zea mays GRMZM2G168269 N
GSMUA_Achr3G05490_001 Musa acuminata GSMUA_Achr3G05490_001 N
GSMUA_Achr9G14080_001 Musa acuminata GSMUA_Achr9G14080_001 N
LPERR09G11190 Leersia perrieri LPERR09G11190 N
MBD02 Vitis vinifera VIT_11s0065g01010 N
MLOC_66533 Hordeum vulgare MLOC_66533 N
OBART09G15030 Oryza barthii OBART09G15030 N
OGLUM09G15680 Oryza glumaepatula OGLUM09G15680 N
OLONG_025649 Oryza longistaminata OLONG_025649 N
OMERI07G04230 Oryza meridionalis OMERI07G04230 N
ONIVA09G15650 Oryza nivara ONIVA09G15650 N
OPUNC09G13490 Oryza punctata OPUNC09G13490 N
ORGLA09G0115900 Oryza glaberrima ORGLA09G0115900 N
ORUFI09G16230 Oryza rufipogon ORUFI09G16230 N
OS09G0494300 Oryza sativa OS09G0494300 N
Pavir.Ba01676 Panicum virgatum Pavir.Ba01676 N
Pavir.J30425 Panicum virgatum Pavir.J30425 N
PGSC0003DMG400013699 Solanum tuberosum PGSC0003DMG400013699 N
Pm008965 Prunus mume Pm008965 N
PRUPE_ppa008652mg Prunus persica PRUPE_ppa008652mg N
Sb02g028780 Sorghum bicolor Sb02g028780 N
Si030613m.g Setaria italica Si030613m.g N
Solyc05g047450.1 Solanum lycopersicum Solyc05g047450.1 N
Traes_5BL_445FD57BE Triticum aestivum Traes_5BL_445FD57BE N
Traes_5DL_F17F78F73 Triticum aestivum Traes_5DL_F17F78F73 N
TRIUR3_24492 Triticum urartu TRIUR3_24492 N