CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSLACG00000015032 *(Latimeria chalumnae)* ARID/BRIGHT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF01388 (ARID)	IPR001606	ENSLACG00000015032	T014582_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Arid5b M01661_2.00	Mus musculus	NDATWHNN	NNDWATHN	PBM Weirauch et al.(2014) pTH4426	0.785	0.988
ARID5B M08707_2.00	Homo sapiens	DNBKDRTATTSKD	HMSAATAYHMVNH	Misc Kulakovskiy et al.(2013) ARI5B_HUMAN.H11MO.0.C	0.785	0.988
Arid5b M08708_2.00	Mus musculus	DNBKDRTATTSKD	HMSAATAYHMVNH	Misc Kulakovskiy et al.(2013) ARI5B_MOUSE.H11MO.0.C	0.785	0.988
ARID5B M09767_2.00	Homo sapiens	KBDGTATTGTRSWB	VWSYACAATACHVM	Transfac Matys et al.(2006) V$MRF2_01	0.785	0.988
Arid5a M00116_2.00	Mus musculus	NHAATATTDNN	NNHAATATTDN	PBM Badis et al.(2009) Arid5a_3770	0.632	0.744
Arid5a M01663_2.00	Rattus norvegicus	NNNRWATHNN	NNDATWYNNN	PBM Weirauch et al.(2014) pTH5121	0.632	0.744
arid6 M01657_2.00	Danio rerio	NNRWATYN	NRATWYNN	PBM Weirauch et al.(2014) pTH5120	0.605	0.605
e_gw.4.260.1_CONSTRUCT M01668_2.00	PBM CONSTRUCTS	NNNDATHNNN	NNNDATHNNN	PBM Weirauch et al.(2014) pTH5122	0.482	0.593
For this family, TFs with SR scores > 0.422* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSLACP00000017061	ARID/BRIGHT	326	412	DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYEVITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE
ENSLACP00000022408	ARID/BRIGHT	132	218	DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYEVITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE

Links
Other ARID/BRIGHT family TFs
Other *Latimeria chalumnae* TFs