CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GE24795 *(Drosophila yakuba)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	FBgn0241897	T017481_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.303
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.262
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.254
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.205
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.205
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.164
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.156
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.156
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.148
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.148
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.139
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.139
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.139
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.115
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.115
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.115
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.115
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.115
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.115
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.115
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.115
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.107
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.107
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.098
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.082
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.074
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.066
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.066
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.066
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.057
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.057
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.057
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.057
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.057
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.057
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.057
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.057
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.057
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.057
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.057
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.057
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.057
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.008
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0269805	AT hook	6	18	VKKRGRPPKASSG
FBpp0269805	AT hook	33	45	PKKRGRPAKNKGS
FBpp0269805	AT hook	52	64	GGQRGRPPKASKI
FBpp0269805	AT hook	92	104	TKGRGRPKSSGGA
FBpp0269805	AT hook	118	130	KRKAGRPKKHQPS
FBpp0269805	AT hook	169	181	GRGLGRPKKRAAE
FBpp0269805	AT hook	191	203	PKKRGRPPQNKSG
FBpp0269805	AT hook	214	225	GRPRGRPKATAA
FBpp0269805	AT hook	257	263	PKKRGRP
FBpp0269805	AT hook	276	288	PKPRGRPPKNIDE

Links
Other AT hook family TFs
Other *Drosophila yakuba* TFs

1072 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB006874	Anopheles albimanus	AALB006874	N
ACEP26305	Atta cephalotes	ACEP26305	N
AEPI010431	Anopheles epiroticus	AEPI010431	N
Alligator_sinensis_CCG004399.1	Alligator sinensis	Alligator_sinensis_CCG004399.1	N
ANCCAN_27245	Ancylostoma caninum	ANCCAN_27245	N
ANCCEY_04348	Ancylostoma ceylanicum	ANCCEY_04348	N
ANCCEY_11895	Ancylostoma ceylanicum	ANCCEY_11895	N
ASIS015315	Anopheles sinensis	ASIS015315	N
CBG15039	Caenorhabditis briggsae	CBG15039	N
CGI_10007832	Crassostrea gigas	CGI_10007832	N
CJA11256	Caenorhabditis japonica	CJA11256	N
CLEC006124	Cimex lectularius	CLEC006124	N
Cmyd_10017639	Chelonia mydas	Cmyd_10017639	I
DMBX1	Monodelphis domestica	ENSMODG00000001963	N
DPRX	Choloepus hoffmanni	ENSCHOG00000010851	N
EFV55958	Trichinella spiralis	EFV55958	N
ENSCJAG00000011381	Callithrix jacchus	ENSCJAG00000011381	N
ENSCSAG00000003788	Chlorocebus sabaeus	ENSCSAG00000003788	N
ENSCSAG00000014537	Chlorocebus sabaeus	ENSCSAG00000014537	I
ENSLAFG00000000420	Loxodonta africana	ENSLAFG00000000420	N
ENSOARG00000006291	Ovis aries	ENSOARG00000006291	N
ENSPANG00000010570	Papio anubis	ENSPANG00000010570	N
ENSPVAG00000005359	Pteropus vampyrus	ENSPVAG00000005359	N
ENSSSCG00000002985	Sus scrofa	ENSSSCG00000002985	N
ENSSTOG00000026735	Ictidomys tridecemlineatus	ENSSTOG00000026735	N
ENSTTRG00000007283	Tursiops truncatus	ENSTTRG00000007283	N
GB50469	Apis mellifera	GB50469	N
GPLIN_000181000	Globodera pallida	GPLIN_000181000	N
Hba_17538	Heterorhabditis bacteriophora	Hba_17538	N
HMEL015659	Heliconius melpomene	HMEL015659	I
Hsal_07660--XP_394161.1_APIME	Harpegnathos saltator	Hsal_07660--XP_394161.1_APIME	I
ISCW006446	Ixodes scapularis	ISCW006446	N
LDEC016519	Leptinotarsa decemlineata	LDEC016519	N
LDEC023625	Leptinotarsa decemlineata	LDEC023625	N
LEUTX	Pan troglodytes	ENSPTRG00000033892	N
LEUTX	Homo sapiens	ENSG00000213921	N
LEUTX	Felis catus	ENSFCAG00000023272	N
LEUTX	Canis familiaris	ENSCAFG00000028552	N
LEUTX	Bos taurus	ENSBTAG00000046425	N
NEMVEDRAFT_v1g48861	Nematostella vectensis	NEMVEDRAFT_v1g48861	N
Ocbimv22035611m.g	Octopus bimaculoides	Ocbimv22035611m.g	I
OESDEN_16215	Oesophagostomum dentatum	OESDEN_16215	N
Otx2	Mus musculus	ENSMUSG00000021848	D
OTX2	Myotis lucifugus	ENSMLUG00000022591	I
OTX2	Choloepus hoffmanni	ENSCHOG00000013827	I
pitx1	Gasterosteus aculeatus	ENSGACG00000016483	I
Sjc_0128760	Schistosoma japonicum	Sjc_0128760	N
SMTD_0001972301	Schistosoma mattheei	SMTD_0001972301	N
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf16485-processed-gene-0.2	N
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1	Meloidogyne floridensis	snap_masked-nMf.1.1.scaf19847-processed-gene-0.1	N
TELCIR_18721	Teladorsagia circumcincta	TELCIR_18721	N
TPRX1	Homo sapiens	ENSG00000178928	I
Traes_3AS_348CA06D5	Triticum aestivum	Traes_3AS_348CA06D5	N
TTRE_0000079401	Trichuris trichiura	TTRE_0000079401	N
unc-30	Caenorhabditis elegans	WBGene00006766	I
WUBG_02192	Wuchereria bancrofti	WUBG_02192	N
WUBG_02624	Wuchereria bancrofti	WUBG_02624	N
XP_002164986.1	Hydra magnipapillata	XP_002164986.1	N
YQE_12574	Dendroctonus ponderosae	YQE_12574	N

GE24795 (Drosophila yakuba) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1072 Related TFs

GE24795 **(Drosophila yakuba)
AT hook**