CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ORUFI11G20440 *(Oryza rufipogon)* AT hook
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02178 (AT_hook)	IPR017956	ORUFI11G20440	T017694_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
athp-3 M01691_2.00	Caenorhabditis elegans	NNDDWDH	DHWHHNN	PBM Weirauch et al.(2014) pTH9097	0.991	0.460
NCU01145 M01693_2.00	Neurospora crassa	RWATAWWTNN	NNAWWTATWY	PBM Weirauch et al.(2014) pTH8916	0.991	0.413
HMGA M01671_2.00	Arabidopsis thaliana	NNNNDWAWH	DWTWHNNNN	PBM Weirauch et al.(2014) pTH7395	0.991	0.349
HMG-I Y M02652_2.00	Pisum sativum	NDWVAAANRVMRWMAY	RTKWYKBYNTTTBWHN	SELEX Mathelier et al.(2014) MA0045.1	0.991	0.349
HMGA2 M09771_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGA2_01	0.991	0.333
ANIA_01690 M01675_2.00	Aspergillus nidulans	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH8216	0.991	0.317
Hmga2 M00751_2.00	Mus musculus	NNNNRHWWNN	NNWWDYNNNN	PBM Weirauch et al.(2013) pTH3046	0.991	0.317
ENSPPYG00000004736 M01685_2.00	Pongo abelii	NNNNDWWW	WWWHNNNN	PBM Weirauch et al.(2014) pTH9279	0.991	0.317
hmg-12 M01690_2.00	Caenorhabditis elegans	NNAWWTAWWTNN	NNAWWTAWWTNN	PBM Weirauch et al.(2014) pTH8997	0.991	0.296
NCU05635 M01694_2.00	Neurospora crassa	NNNWWWWNNN	NNNWWWWNNN	PBM Weirauch et al.(2014) pTH8863	0.991	0.286
HMGA1 M09769_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_01	0.991	0.286
HMGA1 M09770_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HMGIY_Q4	0.991	0.286
FGRRES_05233 M01104_2.00	Fusarium graminearum	NNNDWWAWWH	DWWTWWHNNN	PBM Lambert et al.(2019) pTH11377	0.991	0.254
TVAG_474020 M01106_2.00	Trichomonas vaginalis	DNWWWAWW	WWTWWWNH	PBM Lambert et al.(2019) pTH11493	0.991	0.254
FGRRES_17512 M01105_2.00	Fusarium graminearum	NNNDNWWWW	WWWWNHNNN	PBM Lambert et al.(2019) pTH11412	0.991	0.222
AHL13 M01672_2.00	Arabidopsis thaliana	NAWWTAWWWN	NWWWTAWWTN	PBM Weirauch et al.(2014) pTH8202	0.991	0.190
BRADI3G55950 M01673_2.00	Brachypodium distachyon	NNNNRHDDN	NHHDYNNNN	PBM Weirauch et al.(2014) pTH9369	0.991	0.190
OS02G0824300 M01688_2.00	Oryza sativa	NNDWAWWN	NWWTWHNN	PBM Weirauch et al.(2014) pTH8406	0.991	0.190
VIT_08s0007g04020 M01689_2.00	Vitis vinifera	DBNDDDDDDN	NHHHHHHNVH	PBM Weirauch et al.(2014) pTH9295	0.991	0.190
SUM1 M00008_2.00	Saccharomyces cerevisiae	NNDWWWH	DWWWHNN	PBM Badis et al.(2008) SUM1_2124	0.991	0.190
SUM1 M07439_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0398.1	0.991	0.190
SUM1 M08478_2.00	Saccharomyces cerevisiae	RYGWCASWAAW	WTTWSTGWCRY	Misc DeBoer et al.(2011) YDR310C_383	0.991	0.190
SUM1 M08479_2.00	Saccharomyces cerevisiae	DWAAATWWN	NWWATTTWH	Misc DeBoer et al.(2011) YDR310C_478	0.991	0.190
Q7DLU9_PEA M09772_2.00	Pisum sativum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$HMGIY_01	0.991	0.175
BRADI5G22430 M01674_2.00	Brachypodium distachyon	VNRDDDHDD	HHDHHHYNB	PBM Weirauch et al.(2014) pTH9242	0.991	0.127
ATEG_07399 M01676_2.00	Aspergillus terreus	DHNNHNDWWW	WWWHNDNNDH	PBM Weirauch et al.(2014) pTH9237	0.991	0.127
Setbp1 M01683_2.00	Mus musculus	NDNNNNNNHN	NDNNNNNNHN	PBM Weirauch et al.(2014) pTH1294	0.991	0.127
Ahctf1 M00750_2.00	Mus musculus	AAAWAWAW	ATWTWTTT	PBM Weirauch et al.(2013) pTH2361	0.991	0.127
PK00377.1 M01107_2.00	Cannabis sativa	DAWWWAWW	WWTWWWTH	PBM Lambert et al.(2019) pTH11338	0.991	0.127
ENSACAG00000014978 M01677_2.00	Anolis carolinensis	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9222	0.991	0.111
phf21ab M01678_2.00	Danio rerio	NNNDNADW	WHTNHNNN	PBM Weirauch et al.(2014) pTH9254	0.991	0.111
kmt2cb M01679_2.00	Danio rerio	WWAWAWAT	ATWTWTWW	PBM Weirauch et al.(2014) pTH7876	0.991	0.111
phf21ab M01680_2.00	Gasterosteus aculeatus	AAAAWAAA	TTTWTTTT	PBM Weirauch et al.(2014) pTH9180	0.991	0.111
PHF21A M01681_2.00	Meleagris gallopavo	HDNHNNDNHD	HDNHNNDNHD	PBM Weirauch et al.(2014) pTH7875	0.991	0.111
PHF21A M01103_2.00	Monodelphis domestica	NNNAWATWAATN	NATTWATWTNNN	PBM Lambert et al.(2019) pTH9309	0.991	0.111
PHF21A M01682_2.00	Monodelphis domestica	NNNNNHRH	DYDNNNNN	PBM Weirauch et al.(2014) pTH9335	0.991	0.111
Phf21a M01684_2.00	Mus musculus	NNNATATWAATN	NATTWATATNNN	PBM Weirauch et al.(2014) pTH8550	0.991	0.111
Xrp1 M01686_2.00	Drosophila melanogaster	NNNNDWAWW	WWTWHNNNN	PBM Weirauch et al.(2014) pTH9260	0.991	0.111
MTR_4g101990 M01687_2.00	Medicago truncatula	AAAWTAAT	ATTAWTTT	PBM Weirauch et al.(2014) pTH9209	0.991	0.111
estExt_fgeneshNG_pg.C_820014 M01692_2.00	Naegleria gruberi	NNNNNDRH	DYHNNNNN	PBM Weirauch et al.(2014) pTH9380	0.991	0.111
PK26376.1 M01108_2.00	Cannabis sativa	DDWWWAWW	WWTWWWHH	PBM Lambert et al.(2019) pTH11261	0.991	0.111
Xrp1 M05900_2.00	Drosophila melanogaster	RTKRYGYAAT	ATTRCRYMAY	B1H Zhu et al.(2011) Xrp1_CG6272_SANGER_5_FBgn0261113	0.991	0.111
SUM1 M01517_2.00	Saccharomyces cerevisiae	NNNDWAWW	WWTWHNNN	PBM Zhu et al.(2009) Sum1	0.991	0.000
For this family, TFs with SR scores > 0.990* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ORUFI11G20440.1	AT hook	123	135	KRKRGRPKRVQDS
ORUFI11G20440.1	AT hook	167	178	KKKRGRPKRVQD
ORUFI11G20440.1	AT hook	207	219	TRKRGRPRRVQDG
ORUFI11G20440.1	AT hook	249	261	KRKRGRPKRVPDG
ORUFI11G20440.1	AT hook	282	293	TGKRGRPRKIDV
ORUFI11G20440.2	AT hook	123	135	KRKRGRPKRVQDS
ORUFI11G20440.2	AT hook	167	178	KKKRGRPKRVQD
ORUFI11G20440.2	AT hook	207	219	TRKRGRPRRVQDG
ORUFI11G20440.2	AT hook	249	261	KRKRGRPKRVPDG
ORUFI11G20440.2	AT hook	282	293	TGKRGRPRKIDV

Links
Other AT hook family TFs
Other *Oryza rufipogon* TFs

1073 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL008417	Aedes aegypti	AAEL008417	N	0.000
AARA009694	Anopheles arabiensis	AARA009694	N	0.000
ACAC_0000409101	Angiostrongylus cantonensis	ACAC_0000409101	N	0.000
ACEP12759	Atta cephalotes	ACEP12759	I	0.000
ACHR002403	Anopheles christyi	ACHR002403	N	0.000
ACOC_0001323101	Angiostrongylus costaricensis	ACOC_0001323101	N	0.000
ACOM033320	Anopheles coluzzii	ACOM033320	N	0.000
ACUA003510	Anopheles culicifacies	ACUA003510	N	0.000
ACYPI003297	Acyrthosiphon pisum	ACYPI003297	I	0.000
AEPI008570	Anopheles epiroticus	AEPI008570	N	0.000
AGAP004110	Anopheles gambiae	AGAP004110	N	0.000
ALUE_0001851001	Ascaris lumbricoides	ALUE_0001851001	N	0.000
AMAM021723	Anopheles maculatus	AMAM021723	N	0.000
AMEC005071	Anopheles melas	AMEC005071	N	0.000
AMEM002948	Anopheles merus	AMEM002948	N	0.000
ANCCAN_29654	Ancylostoma caninum	ANCCAN_29654	N	0.000
ANCCEY_08672	Ancylostoma ceylanicum	ANCCEY_08672	N	0.000
AQUA009805	Anopheles quadriannulatus	AQUA009805	N	0.000
ASIS023527	Anopheles sinensis	ASIS023527	N	0.000
ASTEI04275	Anopheles stephensi	ASTEI04275	N	0.000
ASU_10445	Ascaris suum	ASU_10445	N	0.000
A_06553	Schistosoma haematobium	A_06553	N	0.000
BGIBMGA013514	Bombyx mori	BGIBMGA013514	N	0.000
CAOG_02676	Capsaspora owczarzaki	CAOG_02676	N	0.000
CapteG178344	Capitella teleta	CapteG178344	N	0.000
CapteG224864	Capitella teleta	CapteG224864	I	0.000
CBN09380	Caenorhabditis brenneri	CBN09380	N	0.000
ccdc124	Oryzias latipes	ENSORLG00000015728	N	0.000
Cflo_06133--XP_394373.1_APIME	Camponotus floridanus	Cflo_06133--XP_394373.1_APIME	I	0.000
cgd2_870	Cryptosporidium parvum	cgd2_870	N	0.000
CGI_10019404	Crassostrea gigas	CGI_10019404	N	0.000
CHD4	Echinops telfairi	ENSETEG00000005912	N	0.000
CHD4	Microcebus murinus	ENSMICG00000006588	N	0.000
CHD4	Ochotona princeps	ENSOPRG00000003477	N	0.000
CJA05209	Caenorhabditis japonica	CJA05209	N	0.000
CLEC002888	Cimex lectularius	CLEC002888	N	0.000
CMU_009510	Cryptosporidium muris	CMU_009510	N	0.000
CPIJ005084	Culex quinquefasciatus	CPIJ005084	N	0.000
CpipJ_CPIJ005084	Culex pipiens	CpipJ_CPIJ005084	N	0.000
CRE03905	Caenorhabditis remanei	CRE03905	N	0.000
CY34DRAFT_106474	Suillus luteus	CY34DRAFT_106474	N	0.000
D917_07703	Trichinella nativa	D917_07703	N	0.000
D918_07944	Trichuris suis	D918_07944	N	0.000
DAPPUDRAFT_303074	Daphnia pulex	DAPPUDRAFT_303074	N	0.000
DICVIV_03175	Dictyocaulus viviparus	DICVIV_03175	N	0.000
EMIHUDRAFT_117867	Emiliania huxleyi	EMIHUDRAFT_117867	I	0.000
ENSCING00000023833	Ciona intestinalis	ENSCING00000023833	N	0.000
ENSMODG00000024829	Monodelphis domestica	ENSMODG00000024829	N	0.000
ENSSHAG00000004107	Sarcophilus harrisii	ENSSHAG00000004107	N	0.000
estExt_fgenesh1_kg.C_80399	Phytophthora capsici	estExt_fgenesh1_kg.C_80399	N	0.000
estExt_fgenesh2_pg.C_1070085	Branchiostoma floridae	estExt_fgenesh2_pg.C_1070085	N	0.000
estExt_fgenesh2_pm.C_3240002	Branchiostoma floridae	estExt_fgenesh2_pm.C_3240002	N	0.000
ETH_00032160	Eimeria tenella	ETH_00032160	N	0.000
F443_19335	Phytophthora parasitica	F443_19335	N	0.000
fgenesh1_pg.C_scaffold_73784000001	Phytophthora capsici	fgenesh1_pg.C_scaffold_73784000001	N	0.000
fgenesh1_pm.2_#_13	Coccomyxa subellipsoidea C169	fgenesh1_pm.2_#_13	N	0.000
fgeneshCV_pg.C_scaffold_2000022	Chlorella vulgaris	fgeneshCV_pg.C_scaffold_2000022	N	0.000
fgenesh_scip_prom.46568.2049	Phytophthora kernoviae	fgenesh_scip_prom.46568.2049	N	0.000
GB50764	Apis mellifera	GB50764	I	0.000
GE25578	Drosophila yakuba	FBgn0242642	I	0.000
GG13363	Drosophila erecta	FBgn0105635	N	0.000
GH18160	Drosophila grimshawi	FBgn0125628	I	0.000
GK13574	Drosophila willistoni	FBgn0215582	I	0.000
GLOINDRAFT_6870	Rhizophagus irregularis	GLOINDRAFT_6870	N	0.000
GLYMA01G28820	Glycine max	GLYMA01G28820	I	0.000
GLYMA03G08270	Glycine max	GLYMA03G08270	I	0.000
GPUH_0000676401	Gongylonema pulchrum	GPUH_0000676401	N	0.000
GSTUM_00007488001	Tuber melanosporum	GSTUM_00007488001	N	0.000
GUITHDRAFT_162866	Guillardia theta	GUITHDRAFT_162866	N	0.000
HCOI00594600	Haemonchus contortus	HCOI00594600	N	0.000
HelroG66455	Helobdella robusta	HelroG66455	N	0.000
HHAL005242-PA	Halyomorpha halys	HHAL005242-PA	I	0.000
HMEL009197	Heliconius melpomene	HMEL009197	N	0.000
HPBE_0001252601	Heligmosomoides bakeri	HPBE_0001252601	N	0.000
HPLM_0000348901	Haemonchus placei	HPLM_0000348901	N	0.000
Hsal_04778--XP_394373.1_APIME	Harpegnathos saltator	Hsal_04778--XP_394373.1_APIME	I	0.000
ISCW011313	Ixodes scapularis	ISCW011313	N	0.000
KGM_20190	Danaus plexippus	KGM_20190	I	0.000
LCUP006380	Lucilia cuprina	LCUP006380	N	0.000
LotgiG105193	Lottia gigantea	LotgiG105193	N	0.000
LotgiG126557	Lottia gigantea	LotgiG126557	N	0.000
M404DRAFT_79773	Pisolithus tinctorius	M404DRAFT_79773	N	0.000
M407DRAFT_16670	Tulasnella calospora	M407DRAFT_16670	N	0.000
maker-nMf.1.1.scaf18285-snap-gene-0.4	Meloidogyne floridensis	maker-nMf.1.1.scaf18285-snap-gene-0.4	N	0.000
maker-pir_contig_430-fgenesh-gene-0.3	Pythium irregulare	maker-pir_contig_430-fgenesh-gene-0.3	N	0.000
maker-piw_contig_1911-snap-gene-0.6	Pythium iwayamai	maker-piw_contig_1911-snap-gene-0.6	N	0.000
MCINX012524	Melitaea cinxia	MCINX012524	I	0.000
MDOA001488	Musca domestica	MDOA001488	I	0.000
mgf012563m	Mimulus guttatus	mgf012563m	I	0.000
MhA1_Contig1250.frz3.gene10	Meloidogyne hapla	MhA1_Contig1250.frz3.gene10	N	0.000
Minc12734	Meloidogyne incognita	Minc12734	N	0.000
ML11467a	Mnemiopsis leidyi	ML11467a	N	0.000
Moror_16065	Moniliophthora roreri	Moror_16065	I	0.000
MPER_07337	Moniliophthora perniciosa	MPER_07337	N	0.000
MYCTH_2308522	Myceliophthora thermophila	MYCTH_2308522	I	0.000
NBR_0000605501	Nippostrongylus brasiliensis	NBR_0000605501	N	0.000
NECAME_12352	Necator americanus	NECAME_12352	N	0.000
NEMVEDRAFT_v1g201358	Nematostella vectensis	NEMVEDRAFT_v1g201358	I	0.000
NV13812	Nasonia vitripennis	NV13812	I	0.000
Ocbimv22013575m.g	Octopus bimaculoides	Ocbimv22013575m.g	I	0.000
OESDEN_05486	Oesophagostomum dentatum	OESDEN_05486	N	0.000
PEQ_0000413701	Parascaris equorum	PEQ_0000413701	N	0.000
PHACADRAFT_58554	Phanerochaete carnosa	PHACADRAFT_58554	N	0.000
PHUM036320	Pediculus humanus	PHUM036320	N	0.000
Physo132366	Phytophthora sojae	Physo132366	N	0.000
PLICRDRAFT_179042	Plicaturopsis crispa	PLICRDRAFT_179042	I	0.000
PTSG_02585	Salpingoeca rosetta	PTSG_02585	N	0.000
PYU1_G003004	Pythium ultimum	PYU1_G003004	N	0.000
RPRC009760	Rhodnius prolixus	RPRC009760	N	0.000
S40285_07156	Stachybotrys chlorohalonata	S40285_07156	N	0.000
S40288_05696	Stachybotrys chartarum	S40288_05696	N	0.000
SBAD_0000307901	Soboliphyme baturini	SBAD_0000307901	N	0.000
SINV12391	Solenopsis invicta	SINV12391	I	0.000
Sjc_0011880	Schistosoma japonicum	Sjc_0011880	N	0.000
Smp_004360	Schistosoma mansoni	Smp_004360	N	0.000
SMRZ_0002114501	Schistosoma margrebowiei	SMRZ_0002114501	N	0.000
SPPG_03193	Spizellomyces punctatus	SPPG_03193	N	0.000
SPRG_06372	Saprolegnia parasitica	SPRG_06372	N	0.000
TC004658	Tribolium castaneum	TC004658	N	0.000
TCLT_0001081001	Thelazia callipaeda	TCLT_0001081001	N	0.000
TELCIR_11967	Teladorsagia circumcincta	TELCIR_11967	N	0.000
tetur18g00680	Tetranychus urticae	tetur18g00680	I	0.000
TGME49_037260	Toxoplasma gondii	TGME49_037260	N	0.000
THITE_22048	Thielavia terrestris	THITE_22048	I	0.000
TMUE_s0148001000	Trichuris muris	TMUE_s0148001000	N	0.000
TRE_0001918901	Trichobilharzia regenti	TRE_0001918901	N	0.000
TTRE_0000309701	Trichuris trichiura	TTRE_0000309701	N	0.000
XP_002941963	Xenopus tropicalis	XP_002941963	N	0.000
Y73E7A.1	Caenorhabditis elegans	WBGene00022268	N	0.000

ORUFI11G20440 (Oryza rufipogon) AT hook

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1073 Related TFs

ORUFI11G20440 **(Oryza rufipogon)
AT hook**