30170.m014161 (Ricinus communis)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 30170.m014161 T022206_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.898 0.898
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30170.m014161 B3 148 250

Links

Other B3 family TFs
Other Ricinus communis TFs

513 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29742.m001447 Ricinus communis 29742.m001447 N
29842.m003592 Ricinus communis 29842.m003592 N
29842.m003644 Ricinus communis 29842.m003644 N
30086.m000210 Ricinus communis 30086.m000210 N
AMTR_s00147p00088570 Amborella trichopoda AMTR_s00147p00088570 N
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N
Bo3g022870 Brassica oleracea Bo3g022870 N
Bo3g039260 Brassica oleracea Bo3g039260 N
Bo4g009260 Brassica oleracea Bo4g009260 N
Bo4g197120 Brassica oleracea Bo4g197120 N
Bo9g110930 Brassica oleracea Bo9g110930 N
Bostr.24513s0196 Boechera stricta Bostr.24513s0196 N
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N
Bra004539 Brassica rapa Bra004539 N
Bra026297 Brassica rapa Bra026297 N
Bra039283 Brassica rapa Bra039283 N
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N
Carubv10003403m.g Capsella rubella Carubv10003403m.g N
Carubv10018233m.g Capsella rubella Carubv10018233m.g N
Carubv10024406m.g Capsella rubella Carubv10024406m.g N
Carubv10027412m.g Capsella rubella Carubv10027412m.g N
cassava11157.m1 Manihot esculenta cassava11157.m1 N
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N
cassava32987.m1 Manihot esculenta cassava32987.m1 N
cassava46504.m1 Manihot esculenta cassava46504.m1 N
Ca_15029 Cicer arietinum Ca_15029 N
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N
Ciclev10017220m.g Citrus clementina Ciclev10017220m.g N
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N
Cla011563 Citrullus lanatus Cla011563 N
CPC Arabidopsis thaliana AT2G46410 N
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N
GLYMA01G43435 Glycine max GLYMA01G43435 N
GLYMA06G45941 Glycine max GLYMA06G45941 N
GLYMA11G02061 Glycine max GLYMA11G02061 N
GLYMA12G10790 Glycine max GLYMA12G10790 N
GLYMA12G32130 Glycine max GLYMA12G32130 N
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N
Gorai.002G083400 Gossypium raimondii Gorai.002G083400 N
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N
Gorai.010G252300 Gossypium raimondii Gorai.010G252300 N
Gorai.010G253000 Gossypium raimondii Gorai.010G253000 N
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N
Lus10005949.g Linum usitatissimum Lus10005949.g N
MDP0000141474 Malus domestica MDP0000141474 N
MDP0000216918 Malus domestica MDP0000216918 N
MDP0000270078 Malus domestica MDP0000270078 N
MDP0000387366 Malus domestica MDP0000387366 N
MDP0000499190 Malus domestica MDP0000499190 N
MDP0000583070 Malus domestica MDP0000583070 N
mgf005142m Mimulus guttatus mgf005142m N
mgf009009m Mimulus guttatus mgf009009m N
MTR_2g088730 Medicago truncatula MTR_2g088730 N
MTR_4g046737 Medicago truncatula MTR_4g046737 N
MTR_5g009460 Medicago truncatula MTR_5g009460 N
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N
PK11198.1 Cannabis sativa PK11198.1 N
Pm009748 Prunus mume Pm009748 N
Pm018400 Prunus mume Pm018400 N
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N
PRUPE_ppa023926mg Prunus persica PRUPE_ppa023926mg N
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N
SapurV1A.0610s0050 Salix purpurea SapurV1A.0610s0050 N
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N
TCM_005177 Theobroma cacao TCM_005177 N
TCM_011327 Theobroma cacao TCM_011327 N
TCM_016428 Theobroma cacao TCM_016428 N
TCM_030224 Theobroma cacao TCM_030224 N
TCM_046858 Theobroma cacao TCM_046858 N
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N
TRY Arabidopsis thaliana AT5G53200 N
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N