Cla022781 (Citrullus lanatus)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF06217 (GAGA_bind) IPR010409 Cla022781 T024780_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022781 BBR 1 339

Links

Other BBR family TFs
Other Citrullus lanatus TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29609.m000587 Ricinus communis 29609.m000587 N
29742.m001397 Ricinus communis 29742.m001397 N
Al_scaffold_0001_3749 Arabidopsis lyrata Al_scaffold_0001_3749 N
AMTR_s00021p00221770 Amborella trichopoda AMTR_s00021p00221770 N
ARF1 Arabidopsis thaliana AT1G59750 N
ARF7 Oryza sativa OS02G0557200 N
BGIOSGA008429 Oryza indica BGIOSGA008429 N
Cagra.1226s0063 Capsella grandiflora Cagra.1226s0063 N
Ca_17636 Cicer arietinum Ca_17636 N
Ciclev10000491m.g Citrus clementina Ciclev10000491m.g N
Cla001927 Citrullus lanatus Cla001927 N
Cla015243 Citrullus lanatus Cla015243 N
Cucsa.183410 Cucumis sativus Cucsa.183410 N
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I
GSMUA_Achr2G19760_001 Musa acuminata GSMUA_Achr2G19760_001 N
Lus10007440.g Linum usitatissimum Lus10007440.g N
Lus10024455.g Linum usitatissimum Lus10024455.g N
mgf006427m Mimulus guttatus mgf006427m N
MTR_8g027440 Medicago truncatula MTR_8g027440 N
OBART02G20600 Oryza barthii OBART02G20600 N
OLONG_012362 Oryza longistaminata OLONG_012362 N
OMERI02G20310 Oryza meridionalis OMERI02G20310 N
ONIVA02G22590 Oryza nivara ONIVA02G22590 N
OPUNC02G18520 Oryza punctata OPUNC02G18520 N
ORGLA02G0176700 Oryza glaberrima ORGLA02G0176700 N
ORUFI02G21640 Oryza rufipogon ORUFI02G21640 N
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I
POPTR_0003s00890 Populus trichocarpa POPTR_0003s00890 N
PRUPE_ppa002394mg Prunus persica PRUPE_ppa002394mg N
SapurV1A.0225s0120 Salix purpurea SapurV1A.0225s0120 N
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I
Sb04g022830 Sorghum bicolor Sb04g022830 N
Solyc01g103050.2 Solanum lycopersicum Solyc01g103050.2 N
TCM_027113 Theobroma cacao TCM_027113 I