arntl1b (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000035732 T033674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arntl
M01751_2.00 		Mus musculus
NCACGTGAYN
NRTCACGTGN		 PBM
Weirauch et al.(2014)
pTH5064 		0.914 1.000
ARNTL
M02787_2.00 		Homo sapiens
GTCACGTGAC
GTCACGTGAC		 SELEX
Jolma et al.(2013)
ARNTL_1 		0.914 1.000
ARNTL
M04124_2.00 		Homo sapiens
RDCACGTGHN
NDCACGTGHY		 SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX 		0.914 1.000
ARNTL
M08725_2.00 		Homo sapiens
NVDCACGTGBN
NVCACGTGHBN		 Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A 		0.914 1.000
Arntl
M08776_2.00 		Mus musculus
VCACGTGMN
NKCACGTGB		 Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A 		0.914 1.000
Arntl
M09478_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860 		0.914 1.000
Arntl
M09889_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_01 		0.914 1.000
ARNTL
M09841_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BMAL1_Q6 		0.914 1.000
ARNTL
M04125_2.00 		Homo sapiens
NDCACRTGHY
RDCAYGTGHN		 SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000051822 bHLH 76 129
ENSDARP00000089031 bHLH 99 152
ENSDARP00000095296 bHLH 98 151
ENSDARP00000114569 bHLH 75 128

Links

Other bHLH family TFs
Other Danio rerio TFs

89 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g141480 Brassica oleracea Bo3g141480 I
Bo5g051970 Brassica oleracea Bo5g051970 I
Bo5g051980 Brassica oleracea Bo5g051980 I
Bo7g049940 Brassica oleracea Bo7g049940 I
Bo7g049950 Brassica oleracea Bo7g049950 I
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I
Bra010949 Brassica rapa Bra010949 I
Bra030040 Brassica rapa Bra030040 I
Bra030041 Brassica rapa Bra030041 I
Bra032822 Brassica rapa Bra032822 I
Bra032823 Brassica rapa Bra032823 I
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I
Carubv10009364m.g Capsella rubella Carubv10009364m.g I
Carubv10009367m.g Capsella rubella Carubv10009367m.g I
Ca_08506 Cicer arietinum Ca_08506 I
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I
Lus10006411.g Linum usitatissimum Lus10006411.g I
Lus10011356.g Linum usitatissimum Lus10011356.g I
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I
SPL10 Arabidopsis thaliana AT1G27370 D
SPL11 Arabidopsis lyrata scaffold_103051.1 I
SPL11 Arabidopsis thaliana AT1G27360 D
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I