Lus10006411.g (Linum usitatissimum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Lus10006411.g T323526_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.945 0.853
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.896 0.813
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.896 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10006411 SBP 134 208

Links

Other SBP family TFs
Other Linum usitatissimum TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.986
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.980
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.979
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.978
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.978
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.978
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.978
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.977
29929.m004641 Ricinus communis 29929.m004641 I 0.972
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.972
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.967
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.967
mgf010397m Mimulus guttatus mgf010397m N 0.965
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.963
mgf019346m Mimulus guttatus mgf019346m I 0.962
TCM_008772 Theobroma cacao TCM_008772 N 0.961
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.959
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.956
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.956
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.956
Si017749m.g Setaria italica Si017749m.g N 0.955
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.954
Bra030041 Brassica rapa Bra030041 I 0.951
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.951
Bo7g049940 Brassica oleracea Bo7g049940 I 0.950
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.949
MDP0000155354 Malus domestica MDP0000155354 N 0.948
PK16953.1 Cannabis sativa PK16953.1 N 0.948
SPL2 Arabidopsis thaliana AT5G43270 N 0.947
Bo9g058970 Brassica oleracea Bo9g058970 N 0.947
Bra027478 Brassica rapa Bra027478 N 0.947
Bra033671 Brassica rapa Bra033671 N 0.947
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.947
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.947
Pm007020 Prunus mume Pm007020 N 0.946
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.946
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.946
SPL10 Arabidopsis thaliana AT1G27370 D 0.945
Bo7g065290 Brassica oleracea Bo7g065290 N 0.945
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.943
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.941
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.941
Ca_11356 Cicer arietinum Ca_11356 I 0.941
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.940
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.940
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.940
Bo5g051980 Brassica oleracea Bo5g051980 I 0.938
Bra032823 Brassica rapa Bra032823 I 0.938
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.938
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.938
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.937
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.937
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.937
Bo5g051970 Brassica oleracea Bo5g051970 I 0.935
Bra030040 Brassica rapa Bra030040 I 0.935
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.935
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.933
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.932
Bo7g049950 Brassica oleracea Bo7g049950 I 0.930
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.930
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.930
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.930
Ca_08506 Cicer arietinum Ca_08506 I 0.927
Bra010949 Brassica rapa Bra010949 I 0.925
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.923
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.923
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.920
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.920
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.919
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.919
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.919
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.919
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.917
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.916
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.914
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.911
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.910
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.910
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.908
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.908
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.904
MDP0000249364 Malus domestica MDP0000249364 N 0.904
OB02G12930 Oryza brachyantha OB02G12930 N 0.903
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.902
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.902
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.902
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.902
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.902
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.902
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.902
SPL4 Oryza sativa OS02G0174100 N 0.902
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.901
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.901
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.901
SPL11 Arabidopsis thaliana AT1G27360 D 0.896
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.896
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.896
OB02G14840 Oryza brachyantha OB02G14840 N 0.896
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.895
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.893
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.893
SPL12 Oryza indica BGIOSGA020577 N 0.892
OBART06G26610 Oryza barthii OBART06G26610 N 0.892
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.892
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.892
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.892
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.892
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.892
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.892
SPL12 Oryza sativa OS06G0703500 N 0.892
F775_31908 Aegilops tauschii F775_31908 N 0.891
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.891
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.891
SPL3 Oryza indica BGIOSGA007499 N 0.889
OBART02G03260 Oryza barthii OBART02G03260 N 0.889
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.889
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.889
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.889
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.889
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.889
OS02G0139400 Oryza sativa OS02G0139400 N 0.889
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.888
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.888
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.888
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.888