USF1 (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000011338 T034926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009475 bHLH 200 255

Links

Other bHLH family TFs
Other Loxodonta africana TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BN7_573 Wickerhamomyces ciferrii BN7_573 I
CANTEDRAFT_115633 Candida tenuis CANTEDRAFT_115633 N
CaO19.1757 Candida albicans CaO19.1757 N
CaO19.9326 Candida albicans CaO19.9326 N
CD36_24290 Candida dubliniensis CD36_24290 N
CLUG_05144 Candida lusitaniae CLUG_05144 N
CLUG_05144 Clavispora lusitaniae CLUG_05144 N
CORT_0C06530 Candida orthopsilosis CORT_0C06530 N
CPAG_01593 Candida parapsilosis CPAG_01593 N
CTRG_02010 Candida tropicalis CTRG_02010 N
DEHA2F09394g Debaryomyces hansenii DEHA2F09394g N
estExt_fgenesh1_pg.C_chr_4.10541 Pichia stipitis estExt_fgenesh1_pg.C_chr_4.10541 N
G210_5850 Candida maltosa G210_5850 N
GNLVRS01_PISO0K08304g Millerozyma farinosa GNLVRS01_PISO0K08304g N
HPODL_01443 Ogataea parapolymorpha HPODL_01443 I
LELG_02390 Lodderomyces elongisporus LELG_02390 N
PAS_chr1-3_0170 Komagataella pastoris PAS_chr1-3_0170 I
PGUG_01520 Candida guilliermondii PGUG_01520 N
PGUG_01520 Meyerozyma guilliermondii PGUG_01520 N
PICST_67657 Scheffersomyces stipitis PICST_67657 N
SPAPADRAFT_149927 Spathaspora passalidarum SPAPADRAFT_149927 N
XP_002489513.1 Pichia pastoris XP_002489513.1 I