tcf12 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000008508 T036410_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.914 1.000
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.914 1.000
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.914 1.000
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.914 1.000
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.914 1.000
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.914 1.000
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.914 1.000
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.914 1.000
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.914 1.000
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.914 1.000
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.914 1.000
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.914 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.914 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.914 0.885
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.912 0.962
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.912 0.962
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.912 0.962
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.912 0.962
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.912 0.962
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.912 0.962
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.912 0.962
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.962
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.962
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.962
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.923
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.923
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.923
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.923
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.923
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.923
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010690 bHLH 584 637
ENSORLP00000010695 bHLH 583 636

Links

Other bHLH family TFs
Other Oryzias latipes TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_065310 Acremonium chrysogenum ACRE_065310 I
BAUCODRAFT_122462 Baudoinia compniacensis BAUCODRAFT_122462 I
BBA_06902 Beauveria bassiana BBA_06902 I
CFIO01_09529 Colletotrichum fioriniae CFIO01_09529 I
CH063_07756 Colletotrichum higginsianum CH063_07756 I
Cob_02853 Colletotrichum orbiculare Cob_02853 I
COCSADRAFT_146273 Bipolaris sorokiniana COCSADRAFT_146273 I
CPUR_05349 Claviceps purpurea CPUR_05349 I
CSUB01_05661 Colletotrichum sublineola CSUB01_05661 I
estExt_fgenesh2_pg.C_120136 Neurospora discreta estExt_fgenesh2_pg.C_120136 I
estExt_Genewise1.C_32477 Cryphonectria parasitica estExt_Genewise1.C_32477 I
F503_04451 Ophiostoma piceae uamh F503_04451 I
FFUJ_04549 Fusarium fujikuroi FFUJ_04549 I
FOXG_06378 Fusarium oxysporum FOXG_06378 I
FPSE_07181 Fusarium pseudograminearum FPSE_07181 I
FVEG_04228 Fusarium verticillioides FVEG_04228 I
GGTG_04125 Gaeumannomyces graminis GGTG_04125 I
GLRG_07219 Colletotrichum graminicola GLRG_07219 I
GMDG_01402 Pseudogymnoascus destructans GMDG_01402 I
MAJ_02866 Metarhizium majus MAJ_02866 I
MBR_01984 Metarhizium brunneum MBR_01984 I
MGU_02665 Metarhizium guizhouense MGU_02665 I
NCU05308 Neurospora crassa NCU05308 D
NechaG49895 Fusarium solani NechaG49895 I
OIDMADRAFT_108168 Oidiodendron maius OIDMADRAFT_108168 I
PFICI_05140 Pestalotiopsis fici PFICI_05140 I
PODANS_3_4010 Podospora anserina PODANS_3_4010 I
S40285_08437 Stachybotrys chlorohalonata S40285_08437 I
S40288_04589 Stachybotrys chartarum S40288_04589 I
SBOR_0518 Sclerotinia borealis SBOR_0518 I
SEPMUDRAFT_161432 Sphaerulina musiva SEPMUDRAFT_161432 I
SMAC_01681 Sordaria macrospora SMAC_01681 I
SNOG_13376 Stagonospora nodorum SNOG_13376 I
SS1G_01905 Sclerotinia sclerotiorum SS1G_01905 I
TRIATDRAFT_294558 Trichoderma atroviride TRIATDRAFT_294558 I
TRIVIDRAFT_213406 Trichoderma virens TRIVIDRAFT_213406 I
V499_08858 Pseudogymnoascus pannorum V499_08858 I
VDAG_08009 Verticillium dahliae VDAG_08009 I
VDBG_01253 Verticillium alfalfae VDBG_01253 I
VDBG_01253 Verticillium albo atrum VDBG_01253 I
VHEMI00550 Torrubiella hemipterigena VHEMI00550 I
X797_005973 Metarhizium robertsii X797_005973 I