USF1 (Vicugna pacos)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSVPAG00000008421 T038081_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000007836 bHLH 200 255

Links

Other bHLH family TFs
Other Vicugna pacos TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA003304 Oryza indica BGIOSGA003304 N
LPERR02G10380 Leersia perrieri LPERR02G10380 N
LPERR02G10620 Leersia perrieri LPERR02G10620 N
LPERR02G10770 Leersia perrieri LPERR02G10770 N
OB01G21750 Oryza brachyantha OB01G21750 N
OB03G33030 Oryza brachyantha OB03G33030 N
OBART03G24330 Oryza barthii OBART03G24330 N
OBART08G15340 Oryza barthii OBART08G15340 N
OGLUM08G16100 Oryza glumaepatula OGLUM08G16100 N
OMERI03G22160 Oryza meridionalis OMERI03G22160 N
OMERI08G12590 Oryza meridionalis OMERI08G12590 N
ONIVA01G14280 Oryza nivara ONIVA01G14280 N
ONIVA03G25700 Oryza nivara ONIVA03G25700 N
ONIVA08G16460 Oryza nivara ONIVA08G16460 N
OPUNC01G11730 Oryza punctata OPUNC01G11730 N
OPUNC03G22520 Oryza punctata OPUNC03G22520 N
OPUNC08G12800 Oryza punctata OPUNC08G12800 N
ORGLA03G0226500 Oryza glaberrima ORGLA03G0226500 N
ORUFI01G13020 Oryza rufipogon ORUFI01G13020 N
ORUFI03G24940 Oryza rufipogon ORUFI03G24940 N
Pavir.J14267 Panicum virgatum Pavir.J14267 N