Gfo_R015175 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R015175 T047358_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 0.982
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 0.982
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.982
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.982
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 0.982
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 0.982
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.982
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 0.964
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 0.964
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 0.964
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 0.964
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 0.964
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 0.964
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 0.964
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 0.964
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 0.964
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 0.964
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 0.964
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 0.964
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 0.964
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 0.964
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 0.964
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015175 bHLH 37 92

Links

Other bHLH family TFs
Other Geospiza fortis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019356 Ailuropoda melanoleuca ENSAMEG00000019356 I 0.000
ENSCPOG00000001992 Cavia porcellus ENSCPOG00000001992 I 0.000
ENSCSAG00000018417 Chlorocebus sabaeus ENSCSAG00000018417 I 0.000
ENSNLEG00000015956 Nomascus leucogenys ENSNLEG00000015956 I 0.000
ENSOARG00000003699 Ovis aries ENSOARG00000003699 I 0.000
ENSP00000298299 Macaca fascicularis ENSP00000298299 I 0.000
ENSP00000298299-D2 Bos grunniens ENSP00000298299-D2 I 0.000
ENSPANG00000002852 Papio anubis ENSPANG00000002852 I 0.000
ENSPPYG00000002226 Pongo abelii ENSPPYG00000002226 I 0.000
ENSSSCG00000023223 Sus scrofa ENSSSCG00000023223 I 0.000
ENSSTOG00000012374 Ictidomys tridecemlineatus ENSSTOG00000012374 I 0.000
ENSTSYG00000001773 Tarsius syrichta ENSTSYG00000001773 I 0.000
Myotis_brandtii_ZNF22_10006734 Myotis brandtii Myotis_brandtii_ZNF22_10006734 I 0.000
Zfp422 Mus musculus ENSMUSG00000059878 I 0.000
Zfp422 Dipodomys ordii ENSDORG00000005689 I 0.000
Zfp422 Rattus norvegicus ENSRNOG00000013379 I 0.000
ZNF22 Pan troglodytes ENSPTRG00000002455 I 0.000
ZNF22 Canis familiaris ENSCAFG00000028867 I 0.000
ZNF22 Callithrix jacchus ENSCJAG00000022497 I 0.000
ZNF22 Dasypus novemcinctus ENSDNOG00000015002 I 0.000
ZNF22 Tursiops truncatus ENSTTRG00000011729 I 0.000
ZNF22 Tupaia belangeri ENSTBEG00000005332 I 0.000
ZNF22 Equus caballus ENSECAG00000003034 I 0.000
ZNF22 Erinaceus europaeus ENSEEUG00000012611 I 0.000
ZNF22 Pteropus vampyrus ENSPVAG00000014727 I 0.000
ZNF22 Myotis lucifugus ENSMLUG00000006347 I 0.000
ZNF22 Echinops telfairi ENSETEG00000007863 I 0.000
ZNF22 Procavia capensis ENSPCAG00000011827 I 0.000
ZNF22 Homo sapiens ENSG00000165512 D 0.000
ZNF22 Otolemur garnettii ENSOGAG00000002365 I 0.000
ZNF22 Oryctolagus cuniculus ENSOCUG00000001382 I 0.000
ZNF22 Gorilla gorilla ENSGGOG00000007097 I 0.000
ZNF22 Loxodonta africana ENSLAFG00000000878 I 0.000
ZNF22 Monodelphis domestica ENSMODG00000010011 I 0.000
ZNF22 Macaca mulatta ENSMMUG00000017492 I 0.000