CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bhlhe41
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000030256
T035703_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a basic helix-loop-helix protein expressed in various tissues. The encoded protein can interact with Arntl or compete for E-box binding sites in the promoter of Per1 and repress Clock/Arntl's transactivation of Per1. This gene is believed to be involved in the control of circadian rhythm and cell differentiation. Defects in this gene are associated with the short sleep phenotype. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2014]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Bhlhe41
M01739_2.00
Mus musculus
NMNCGTGMN
NKCACGNKN
PBM
Weirauch et al.(2014)
pTH5060
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLHE41
M02782_2.00
Homo sapiens
NKCACGTGMN
NKCACGTGMN
SELEX
Jolma et al.(2013)
BHLHB3_1
0.914
0.982
BHLHE41
M02783_2.00
Homo sapiens
RKCACGTGAY
RTCACGTGMY
SELEX
Jolma et al.(2013)
BHLHE41_1
0.914
0.982
BHLHE41
M04106_2.00
Homo sapiens
VTCACGTGAB
VTCACGTGAB
SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX
0.914
0.982
BHLHE41
M09833_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC2_Q2
0.914
1.000
BHLHE41
M09834_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC2_Q3
0.914
1.000
BHLHE41
M04107_2.00
Homo sapiens
RTCACGTGAY
RTCACGTGAY
SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX
0.914
0.982
Bhlhe40
M00119_2.00
Mus musculus
DCACGTGMN
NKCACGTGH
PBM
Badis et al.(2009)
Bhlhb2_1274
0.914
0.964
Bhlhe40
M01738_2.00
Mus musculus
NCACRNBN
NVNYGTGN
PBM
Weirauch et al.(2014)
pTH4330
0.914
0.964
BHLHE40
M02788_2.00
Homo sapiens
NKCACGTGMH
DKCACGTGMN
SELEX
Jolma et al.(2013)
BHLHB2_1
0.914
0.964
Bhlhe40
M02817_2.00
Mus musculus
NKCACGTGMN
NKCACGTGMN
SELEX
Jolma et al.(2013)
Bhlhb2_1
0.914
0.964
Bhlhe40
M02818_2.00
Mus musculus
NKCACGTGMN
NKCACGTGMN
SELEX
Jolma et al.(2013)
Bhlhb2_2
0.914
0.964
BHLHE40
M04126_2.00
Homo sapiens
VTCACGTGAB
VTCACGTGAB
SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX
0.914
0.981
BHLHE40
M07798_2.00
Homo sapiens
DCACGTGMSN
NSKCACGTGH
ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha
0.914
0.981
BHLHE40
M08726_2.00
Homo sapiens
DDCACGTGMS
SKCACGTGHH
Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A
0.914
0.964
Bhlhe40
M08761_2.00
Mus musculus
DCACGTGMS
SKCACGTGH
Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A
0.914
0.964
BHLHE40
M09456_2.00
Homo sapiens
DCACGTGMNN
NNKCACGTGH
Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477
0.914
0.964
BHLHE40
M09842_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BHLHE40_03
0.914
0.964
BHLHE40
M09843_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC1_Q2
0.914
0.964
BHLHE40
M09844_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DEC1_Q3
0.914
0.964
BHLHE40
M09845_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STRA13_01
0.914
0.981
BHLHE40
M04127_2.00
Homo sapiens
RTCACGTGAY
RTCACGTGAY
SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX
0.914
0.981
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01739_2.00
bHLH
16
70
KLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALT
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000032386
bHLH
46
100
KLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALT
ENSMUSP00000107332
bHLH
45
100
YKLPHRLIEKKRRDRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHLKALT
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
118 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000013696
Pongo abelii
ENSPPYG00000013696
I
0.914
ENSPSIG00000016504
Pelodiscus sinensis
ENSPSIG00000016504
I
0.914
ENSPPYG00000004372
Pongo abelii
ENSPPYG00000004372
I
0.914
ENSPFOG00000007800
Poecilia formosa
ENSPFOG00000007800
I
0.914
ENSPANG00000008563
Papio anubis
ENSPANG00000008563
I
0.914
ENSPSIG00000018157
Pelodiscus sinensis
ENSPSIG00000018157
I
0.914
BHLHE41
Pan troglodytes
ENSPTRG00000004779
I
0.914
Bhlhe40
Rattus norvegicus
ENSRNOG00000007152
I
0.914
BHLHE40
Pteropus vampyrus
ENSPVAG00000007723
I
0.914
BHLHE41
Pteropus vampyrus
ENSPVAG00000004507
I
0.914
BHLHE40
Pan troglodytes
ENSPTRG00000014571
I
0.914
ENSPANG00000006688
Papio anubis
ENSPANG00000006688
I
0.914
dec1b
Oryzias latipes
ENSORLG00000014397
I
0.914
BHLHE40
Ornithorhynchus anatinus
ENSOANG00000003764
I
0.914
ENSOARG00000007840
Ovis aries
ENSOARG00000007840
I
0.914
ENSNLEG00000005307
Nomascus leucogenys
ENSNLEG00000005307
I
0.914
ENSNLEG00000003704
Nomascus leucogenys
ENSNLEG00000003704
I
0.914
ENSOARG00000019968
Ovis aries
ENSOARG00000019968
I
0.914
BHLHE41
Anolis carolinensis
ENSACAG00000000432
I
0.914
ENSOPRG00000009637
Ochotona princeps
ENSOPRG00000009637
I
0.914
ENSONIG00000019148
Oreochromis niloticus
ENSONIG00000019148
I
0.914
ENSOGAG00000032001
Otolemur garnettii
ENSOGAG00000032001
I
0.914
BHLHE40
Otolemur garnettii
ENSOGAG00000029762
I
0.914
Bhlhe41
Rattus norvegicus
ENSRNOG00000048961
I
0.914
ENSSSCG00000011534
Sus scrofa
ENSSSCG00000011534
I
0.914
ENSP00000256495-D1
Bos grunniens
ENSP00000256495-D1
I
0.914
ENSP00000256495
Macaca fascicularis
ENSP00000256495
I
0.914
ENSMMUP00000024507
Macaca fascicularis
ENSMMUP00000024507
I
0.914
ENSBTAP00000040772-D1
Bos grunniens
ENSBTAP00000040772-D1
I
0.914
Cmyd_10013769
Chelonia mydas
Cmyd_10013769
I
0.914
Gfo_R015175
Geospiza fortis
Gfo_R015175
I
0.914
Myotis_brandtii_BHLHE40_10019553
Myotis brandtii
Myotis_brandtii_BHLHE40_10019553
I
0.914
bhlhe41
Xenopus tropicalis
XB-GENE-994875
I
0.914
Pvit_19380
Pogona vitticeps
Pvit_19380
I
0.914
Pvit_15832
Pogona vitticeps
Pvit_15832
I
0.914
Myotis_brandtii_BHLHE41_10027341
Myotis brandtii
Myotis_brandtii_BHLHE41_10027341
I
0.914
Cmyd_10013122
Chelonia mydas
Cmyd_10013122
I
0.914
Alligator_sinensis_CCG021907.1
Alligator sinensis
Alligator_sinensis_CCG021907.1
I
0.914
ENSTGUG00000012230
Taeniopygia guttata
ENSTGUG00000012230
I
0.914
ENSSTOG00000021007
Ictidomys tridecemlineatus
ENSSTOG00000021007
I
0.914
ENSSTOG00000000793
Ictidomys tridecemlineatus
ENSSTOG00000000793
I
0.914
BHLHE41
Sus scrofa
ENSSSCG00000028552
I
0.914
BHLHE40
Takifugu rubripes
ENSTRUG00000011390
I
0.914
ENSTSYG00000002535
Tarsius syrichta
ENSTSYG00000002535
I
0.914
Aan_R007938
Calypte anna
Aan_R007938
I
0.914
ENSXMAG00000002248
Xiphophorus maculatus
ENSXMAG00000002248
I
0.914
BHLHE41
Tursiops truncatus
ENSTTRG00000014501
I
0.914
BHLHE40
Tursiops truncatus
ENSTTRG00000002786
I
0.914
Bhlhe40
Mus musculus
ENSMUSG00000030103
D
0.914
BHLHE40
Oryctolagus cuniculus
ENSOCUG00000015177
I
0.914
BHLHE40
Equus caballus
ENSECAG00000015069
I
0.914
BHLHE41
Echinops telfairi
ENSETEG00000017468
I
0.914
ENSECAG00000000494
Equus caballus
ENSECAG00000000494
I
0.914
ENSDORG00000006908
Dipodomys ordii
ENSDORG00000006908
I
0.914
BHLHE40
Dasypus novemcinctus
ENSDNOG00000035717
I
0.914
ENSFALG00000003877
Ficedula albicollis
ENSFALG00000003877
I
0.914
ENSFALG00000013572
Ficedula albicollis
ENSFALG00000013572
I
0.914
BHLHE40
Homo sapiens
ENSG00000134107
D
0.914
BHLHE40
Gasterosteus aculeatus
ENSGACG00000000659
I
0.914
BHLHE41
Homo sapiens
ENSG00000123095
D
0.914
ENSMPUG00000017029
Mustela putorius furo
ENSMPUG00000017029
I
0.914
BHLHE40
Felis catus
ENSFCAG00000002966
I
0.914
bhlhe41
Danio rerio
ENSDARG00000041691
I
0.914
ENSCSAG00000010905
Chlorocebus sabaeus
ENSCSAG00000010905
I
0.914
ENSAMXG00000020366
Astyanax mexicanus
ENSAMXG00000020366
I
0.914
BHLHE40
Bos taurus
ENSBTAG00000009863
I
0.914
ENSAMEG00000016060
Ailuropoda melanoleuca
ENSAMEG00000016060
I
0.914
ENSAMEG00000011905
Ailuropoda melanoleuca
ENSAMEG00000011905
I
0.914
BHLHE40
Anolis carolinensis
ENSACAG00000012577
I
0.914
BHLHE41
Bos taurus
ENSBTAG00000030575
I
0.914
BHLHE40
Canis familiaris
ENSCAFG00000005621
I
0.914
ENSCSAG00000007728
Chlorocebus sabaeus
ENSCSAG00000007728
I
0.914
ENSCPOG00000025122
Cavia porcellus
ENSCPOG00000025122
I
0.914
BHLHE40
Callithrix jacchus
ENSCJAG00000015832
I
0.914
ENSCAFG00000031081
Canis familiaris
ENSCAFG00000031081
I
0.914
BHLHE40
Gallus gallus
ENSGALG00000008308
I
0.914
ENSFCAG00000022143
Felis catus
ENSFCAG00000022143
I
0.914
ENSLOCG00000010962
Lepisosteus oculatus
ENSLOCG00000010962
I
0.914
BHLHE41
Gorilla gorilla
ENSGGOG00000015498
I
0.914
BHLHE41
Loxodonta africana
ENSLAFG00000030711
I
0.914
ENSMMUG00000014588
Macaca mulatta
ENSMMUG00000014588
I
0.914
BHLHE40
Monodelphis domestica
ENSMODG00000004516
I
0.914
ENSLOCG00000015327
Lepisosteus oculatus
ENSLOCG00000015327
I
0.914
BHLHE41
Myotis lucifugus
ENSMLUG00000028371
I
0.914
ENSMEUG00000013058
Macropus eugenii
ENSMEUG00000013058
I
0.914
ENSMEUG00000010801
Macropus eugenii
ENSMEUG00000010801
I
0.914
ENSMMUG00000018629
Macaca mulatta
ENSMMUG00000018629
I
0.914
BHLHE41
Monodelphis domestica
ENSMODG00000016551
I
0.914
BHLHE40
Loxodonta africana
ENSLAFG00000004896
I
0.914
ENSGMOG00000004494
Gadus morhua
ENSGMOG00000004494
I
0.914
BHLHE40
Gorilla gorilla
ENSGGOG00000015864
I
0.914
ENSMPUG00000010346
Mustela putorius furo
ENSMPUG00000010346
I
0.914
ENSLACG00000013163
Latimeria chalumnae
ENSLACG00000013163
I
0.914
ENSNLEG00000026535
Nomascus leucogenys
ENSNLEG00000026535
I
0.894
bhlhe40.L
Xenopus laevis
XB-GENE-865608
I
0.890
ENSONIG00000020277
Oreochromis niloticus
ENSONIG00000020277
I
0.890
ENSGMOG00000002353
Gadus morhua
ENSGMOG00000002353
I
0.890
bhlhe40
Xenopus tropicalis
XB-GENE-486416
I
0.890
bhlhe40
Gasterosteus aculeatus
ENSGACG00000011940
I
0.890
bhlhe40.S
Xenopus laevis
XB-GENE-17337587
I
0.890
ENSPFOG00000004275
Poecilia formosa
ENSPFOG00000004275
I
0.890
bhlhe40
Takifugu rubripes
ENSTRUG00000014524
I
0.890
dec1a
Oryzias latipes
ENSORLG00000012739
I
0.890
ENSAMXG00000007020
Astyanax mexicanus
ENSAMXG00000007020
I
0.890
ENSXMAG00000008981
Xiphophorus maculatus
ENSXMAG00000008981
I
0.890
bhlhe40
Tetraodon nigroviridis
ENSTNIG00000007338
I
0.890
bhlhe40
Danio rerio
ENSDARG00000004060
I
0.890
ENSXMAG00000001113
Xiphophorus maculatus
ENSXMAG00000001113
I
0.889
ENSPFOG00000015542
Poecilia formosa
ENSPFOG00000015542
I
0.889
ENSPMAG00000003684
Petromyzon marinus
ENSPMAG00000003684
I
0.889
bhlhe41
Gasterosteus aculeatus
ENSGACG00000011684
I
0.889
ENSONIG00000014711
Oreochromis niloticus
ENSONIG00000014711
I
0.889
bhlhe41
Tetraodon nigroviridis
ENSTNIG00000012152
I
0.889
Afo_R006295
Aptenodytes forsteri
Afo_R006295
I
0.889
bhlhe41
Oryzias latipes
ENSORLG00000011401
I
0.889
bhlhe41
Takifugu rubripes
ENSTRUG00000005639
I
0.889
ENSGMOG00000003444
Gadus morhua
ENSGMOG00000003444
I
0.858