Carubv10023498m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10023498m.g T049430_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.914 1.000
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.844 0.961
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023498m bHLH 289 339

Links

Other bHLH family TFs
Other Capsella rubella TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I
ANCDUO_09404 Ancylostoma duodenale ANCDUO_09404 N
ASU_04305 Ascaris suum ASU_04305 I
Bm2389 Brugia malayi Bm2389 I
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I
CBG17744 Caenorhabditis briggsae CBG17744 I
CBN13729 Caenorhabditis brenneri CBN13729 I
CJA08328 Caenorhabditis japonica CJA08328 I
CRE02711 Caenorhabditis remanei CRE02711 I
CRE10161 Caenorhabditis remanei CRE10161 I
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I
DME_0000188101 Dracunculus medinensis DME_0000188101 I
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I
GPLIN_001106000 Globodera pallida GPLIN_001106000 I
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I
HCOI01716000 Haemonchus contortus HCOI01716000 I
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I
L596_g3809 Steinernema carpocapsae L596_g3809 I
L889_g8621 Steinernema feltiae L889_g8621 I
L893_g27201 Steinernema glaseri L893_g27201 I
L898_g2799 Steinernema monticolum L898_g2799 I
LOAG_01074 Loa loa LOAG_01074 I
nAv.1.0.1.g09235 Acanthocheilonema viteae nAv.1.0.1.g09235 N
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I
nhr-31 Caenorhabditis elegans WBGene00003625 I
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I
Ppa-nhr-31 Pristionchus pacificus PPA24219 I
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I
SMUV_0000212501 Syphacia muris SMUV_0000212501 I
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I
WBGene00241236 Onchocerca volvulus WBGene00241236 I