Gorai.011G144600 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.011G144600 T050099_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.866 0.804
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.725
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.725
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G144600.1 bHLH 262 312

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29700.m000761 Ricinus communis 29700.m000761 I
29706.m001283 Ricinus communis 29706.m001283 I
29739.m003775 Ricinus communis 29739.m003775 I
30073.m002312 Ricinus communis 30073.m002312 I
30190.m011066 Ricinus communis 30190.m011066 I
AMTR_s00024p00228870 Amborella trichopoda AMTR_s00024p00228870 I
AMTR_s00040p00189460 Amborella trichopoda AMTR_s00040p00189460 I
AMTR_s00048p00216350 Amborella trichopoda AMTR_s00048p00216350 I
Aquca_013_00537 Aquilegia coerulea Aquca_013_00537 I
Aquca_052_00053 Aquilegia coerulea Aquca_052_00053 I
Aquca_076_00086 Aquilegia coerulea Aquca_076_00086 I
AtGRF5 Arabidopsis lyrata fgenesh2_kg.3__1504__AT3G13960.1 I
AtGRF6 Arabidopsis thaliana AT2G06200 D
BGIOSGA005785 Oryza indica BGIOSGA005785 I
BGIOSGA014417 Oryza indica BGIOSGA014417 I
BGIOSGA022056 Oryza indica BGIOSGA022056 I
BGIOSGA022506 Oryza indica BGIOSGA022506 I
Bo1g134740 Brassica oleracea Bo1g134740 I
Bo3g065850 Brassica oleracea Bo3g065850 I
Bo5g131870 Brassica oleracea Bo5g131870 I
Bostr.24399s0028 Boechera stricta Bostr.24399s0028 I
Bostr.28625s0309 Boechera stricta Bostr.28625s0309 I
Bra001532 Brassica rapa Bra001532 I
Bra015184 Brassica rapa Bra015184 I
Bra021521 Brassica rapa Bra021521 I
Bra027384 Brassica rapa Bra027384 I
BRADI1G46427 Brachypodium distachyon BRADI1G46427 I
BRADI1G50597 Brachypodium distachyon BRADI1G50597 I
BRADI3G52547 Brachypodium distachyon BRADI3G52547 I
BRADI3G57267 Brachypodium distachyon BRADI3G57267 I
BRADI5G20607 Brachypodium distachyon BRADI5G20607 I
Cagra.0736s0034 Capsella grandiflora Cagra.0736s0034 I
Cagra.0757s0005 Capsella grandiflora Cagra.0757s0005 I
Carubv10013860m.g Capsella rubella Carubv10013860m.g I
Carubv10015887m.g Capsella rubella Carubv10015887m.g I
cassava14256.m1 Manihot esculenta cassava14256.m1 I
cassava2802.m1 Manihot esculenta cassava2802.m1 I
cassava30116.valid.m1 Manihot esculenta cassava30116.valid.m1 I
cassava34867.m1 Manihot esculenta cassava34867.m1 I
cassava39602.m1 Manihot esculenta cassava39602.m1 I
cassava40748.m1 Manihot esculenta cassava40748.m1 I
cassava41173.m1 Manihot esculenta cassava41173.m1 I
cassava41970.valid.m1 Manihot esculenta cassava41970.valid.m1 I
Ca_10012 Cicer arietinum Ca_10012 I
Ca_11607 Cicer arietinum Ca_11607 I
Ca_23149 Cicer arietinum Ca_23149 I
chr3.CM0127.490.nc Lotus japonicus chr3.CM0127.490.nc I
Ciclev10008922m.g Citrus clementina Ciclev10008922m.g I
Ciclev10022033m.g Citrus clementina Ciclev10022033m.g I
Ciclev10025855m.g Citrus clementina Ciclev10025855m.g I
Ciclev10032065m.g Citrus clementina Ciclev10032065m.g I
Cla006913 Citrullus lanatus Cla006913 I
Cla011348 Citrullus lanatus Cla011348 I
Cla012781 Citrullus lanatus Cla012781 I
Cla017125 Citrullus lanatus Cla017125 I
Cucsa.017410 Cucumis sativus Cucsa.017410 I
Cucsa.117300 Cucumis sativus Cucsa.117300 I
Cucsa.141640 Cucumis sativus Cucsa.141640 I
Cucsa.192190 Cucumis sativus Cucsa.192190 I
Eucgr.C00823 Eucalyptus grandis Eucgr.C00823 I
Eucgr.D02603 Eucalyptus grandis Eucgr.D02603 I
Eucgr.F04420 Eucalyptus grandis Eucgr.F04420 I
evm.TU.supercontig_25.118 Carica papaya evm.TU.supercontig_25.118 I
evm.TU.supercontig_28.61 Carica papaya evm.TU.supercontig_28.61 I
evm.TU.supercontig_43.138 Carica papaya evm.TU.supercontig_43.138 I
F775_13620 Aegilops tauschii F775_13620 I
F775_19681 Aegilops tauschii F775_19681 I
F775_24390 Aegilops tauschii F775_24390 I
F775_52301 Aegilops tauschii F775_52301 I
gene07429-v1.0-hybrid Fragaria vesca gene07429-v1.0-hybrid I
gene12474-v1.0-hybrid Fragaria vesca gene12474-v1.0-hybrid I
gene12549-v1.0-hybrid Fragaria vesca gene12549-v1.0-hybrid I
gene13517-v1.0-hybrid Fragaria vesca gene13517-v1.0-hybrid I
GLYMA01G44471 Glycine max GLYMA01G44471 I
GLYMA07G04290 Glycine max GLYMA07G04290 I
GLYMA09G07990 Glycine max GLYMA09G07990 I
GLYMA11G01060 Glycine max GLYMA11G01060 I
GLYMA11G11826 Glycine max GLYMA11G11826 I
GLYMA12G01730 Glycine max GLYMA12G01730 I
GLYMA13G16924 Glycine max GLYMA13G16924 I
GLYMA15G19460 Glycine max GLYMA15G19460 I
GLYMA16G00971 Glycine max GLYMA16G00971 I
GLYMA17G05800 Glycine max GLYMA17G05800 I
Gorai.003G057700 Gossypium raimondii Gorai.003G057700 I
Gorai.004G204600 Gossypium raimondii Gorai.004G204600 I
Gorai.008G241800 Gossypium raimondii Gorai.008G241800 I
Gorai.009G035200 Gossypium raimondii Gorai.009G035200 I
Gorai.011G058800 Gossypium raimondii Gorai.011G058800 I
Gorai.013G184200 Gossypium raimondii Gorai.013G184200 I
Gorai.013G225300 Gossypium raimondii Gorai.013G225300 I
GRF1 Oryza indica BGIOSGA005497 I
GRF1 Oryza sativa OS02G0776900 I
GRF2 Oryza sativa OS06G0204800 I
GRF5 Arabidopsis thaliana AT3G13960 I
GRMZM2G034876 Zea mays GRMZM2G034876 I
GRMZM2G041223 Zea mays GRMZM2G041223 I
GRMZM2G067743 Zea mays GRMZM2G067743 I
GRMZM2G098594 Zea mays GRMZM2G098594 I
GRMZM2G105335 Zea mays GRMZM2G105335 I
GRMZM2G129147 Zea mays GRMZM2G129147 I
GRMZM5G850129 Zea mays GRMZM5G850129 I
GRMZM5G893117 Zea mays GRMZM5G893117 I
GSMUA_Achr10G06370_001 Musa acuminata GSMUA_Achr10G06370_001 I
GSMUA_Achr11G21590_001 Musa acuminata GSMUA_Achr11G21590_001 I
GSMUA_Achr1G21940_001 Musa acuminata GSMUA_Achr1G21940_001 I
GSMUA_Achr1G23840_001 Musa acuminata GSMUA_Achr1G23840_001 I
GSMUA_Achr2G04650_001 Musa acuminata GSMUA_Achr2G04650_001 I
GSMUA_Achr5G20170_001 Musa acuminata GSMUA_Achr5G20170_001 I
GSMUA_Achr6G01270_001 Musa acuminata GSMUA_Achr6G01270_001 I
GSMUA_Achr7G02330_001 Musa acuminata GSMUA_Achr7G02330_001 I
GSMUA_Achr8G30640_001 Musa acuminata GSMUA_Achr8G30640_001 I
GSMUA_AchrUn_randomG04320_001 Musa acuminata GSMUA_AchrUn_randomG04320_001 I
LjT02E24.10.nc Lotus japonicus LjT02E24.10.nc I
LjT10E17.120.nd Lotus japonicus LjT10E17.120.nd I
LPERR02G23730 Leersia perrieri LPERR02G23730 I
LPERR02G28430 Leersia perrieri LPERR02G28430 I
LPERR04G19760 Leersia perrieri LPERR04G19760 I
LPERR06G01000 Leersia perrieri LPERR06G01000 I
LPERR06G06090 Leersia perrieri LPERR06G06090 I
Lus10000468.g Linum usitatissimum Lus10000468.g I
Lus10000473.g Linum usitatissimum Lus10000473.g I
Lus10004455.g Linum usitatissimum Lus10004455.g I
Lus10008916.g Linum usitatissimum Lus10008916.g I
Lus10009533.g Linum usitatissimum Lus10009533.g I
Lus10015651.g Linum usitatissimum Lus10015651.g I
Lus10020352.g Linum usitatissimum Lus10020352.g I
Lus10033441.g Linum usitatissimum Lus10033441.g I
Lus10037668.g Linum usitatissimum Lus10037668.g I
MDP0000243533 Malus domestica MDP0000243533 I
MDP0000274400 Malus domestica MDP0000274400 I
MDP0000276970 Malus domestica MDP0000276970 I
mgf002023m Mimulus guttatus mgf002023m I
mgf020920m Mimulus guttatus mgf020920m I
mgf026507m Mimulus guttatus mgf026507m I
MLOC_64055 Hordeum vulgare MLOC_64055 I
MTR_0001s0490 Medicago truncatula MTR_0001s0490 I
MTR_2g041430 Medicago truncatula MTR_2g041430 I
MTR_4g125490 Medicago truncatula MTR_4g125490 I
MTR_8g020560 Medicago truncatula MTR_8g020560 I
OB02G41370 Oryza brachyantha OB02G41370 I
OB04G31020 Oryza brachyantha OB04G31020 I
OB06G11200 Oryza brachyantha OB06G11200 I
OBART02G29160 Oryza barthii OBART02G29160 I
OBART02G34550 Oryza barthii OBART02G34550 I
OBART04G24070 Oryza barthii OBART04G24070 I
OBART06G01070 Oryza barthii OBART06G01070 I
OGLUM02G29770 Oryza glumaepatula OGLUM02G29770 I
OGLUM02G35690 Oryza glumaepatula OGLUM02G35690 I
OGLUM04G24010 Oryza glumaepatula OGLUM04G24010 I
OGLUM06G01060 Oryza glumaepatula OGLUM06G01060 I
OGLUM06G07010 Oryza glumaepatula OGLUM06G07010 I
OLONG_003255 Oryza longistaminata OLONG_003255 I
OLONG_006788 Oryza longistaminata OLONG_006788 I
OLONG_008372 Oryza longistaminata OLONG_008372 I
OMERI02G28100 Oryza meridionalis OMERI02G28100 I
OMERI02G32800 Oryza meridionalis OMERI02G32800 I
OMERI04G19930 Oryza meridionalis OMERI04G19930 I
OMERI06G01060 Oryza meridionalis OMERI06G01060 I
OMERI06G07610 Oryza meridionalis OMERI06G07610 I
ONIVA02G31920 Oryza nivara ONIVA02G31920 I
ONIVA02G36590 Oryza nivara ONIVA02G36590 I
ONIVA04G23220 Oryza nivara ONIVA04G23220 I
ONIVA06G01450 Oryza nivara ONIVA06G01450 I
OPUNC02G26750 Oryza punctata OPUNC02G26750 I
OPUNC02G31900 Oryza punctata OPUNC02G31900 I
OPUNC04G21620 Oryza punctata OPUNC04G21620 I
OPUNC06G01050 Oryza punctata OPUNC06G01050 I
OPUNC06G06310 Oryza punctata OPUNC06G06310 I
orange1.1g020051m.g Citrus sinensis orange1.1g020051m.g I
orange1.1g023105m.g Citrus sinensis orange1.1g023105m.g I
orange1.1g028751m.g Citrus sinensis orange1.1g028751m.g I
orange1.1g047108m.g Citrus sinensis orange1.1g047108m.g I
ORGLA02G0298900 Oryza glaberrima ORGLA02G0298900 I
ORGLA04G0206400 Oryza glaberrima ORGLA04G0206400 I
ORGLA06G0010200 Oryza glaberrima ORGLA06G0010200 I
ORGLA06G0059900 Oryza glaberrima ORGLA06G0059900 I
ORUFI02G30740 Oryza rufipogon ORUFI02G30740 I
ORUFI02G36060 Oryza rufipogon ORUFI02G36060 I
ORUFI04G25800 Oryza rufipogon ORUFI04G25800 I
ORUFI06G01080 Oryza rufipogon ORUFI06G01080 I
ORUFI06G06870 Oryza rufipogon ORUFI06G06870 I
OS04G0600900 Oryza sativa OS04G0600900 I
Pavir.Aa00789 Panicum virgatum Pavir.Aa00789 I
Pavir.Ab02786 Panicum virgatum Pavir.Ab02786 I
Pavir.Da01847 Panicum virgatum Pavir.Da01847 I
Pavir.Da02366 Panicum virgatum Pavir.Da02366 I
Pavir.Db02421 Panicum virgatum Pavir.Db02421 I
Pavir.Ga00724 Panicum virgatum Pavir.Ga00724 I
Pavir.Gb00674 Panicum virgatum Pavir.Gb00674 I
Pavir.J03212 Panicum virgatum Pavir.J03212 I
Pavir.J14128 Panicum virgatum Pavir.J14128 I
PDK_20s1344231g002 Phoenix dactylifera PDK_20s1344231g002 I
PGSC0003DMG400013004 Solanum tuberosum PGSC0003DMG400013004 I
PGSC0003DMG400018491 Solanum tuberosum PGSC0003DMG400018491 I
PGSC0003DMG400029384 Solanum tuberosum PGSC0003DMG400029384 I
PGSC0003DMG400030881 Solanum tuberosum PGSC0003DMG400030881 I
PK09793.1 Cannabis sativa PK09793.1 I
PK28107.1 Cannabis sativa PK28107.1 I
Pm013274 Prunus mume Pm013274 I
Pm019573 Prunus mume Pm019573 I
Pm023072 Prunus mume Pm023072 I
Pm027054 Prunus mume Pm027054 I
POPTR_0001s01480 Populus trichocarpa POPTR_0001s01480 I
POPTR_0001s16920 Populus trichocarpa POPTR_0001s16920 I
POPTR_0003s06360 Populus trichocarpa POPTR_0003s06360 I
POPTR_0003s10000 Populus trichocarpa POPTR_0003s10000 I
POPTR_0006s14560 Populus trichocarpa POPTR_0006s14560 I
POPTR_0013s07500 Populus trichocarpa POPTR_0013s07500 I
POPTR_0018s07140 Populus trichocarpa POPTR_0018s07140 I
POPTR_0019s05910 Populus trichocarpa POPTR_0019s05910 I
PRUPE_ppa011917mg Prunus persica PRUPE_ppa011917mg I
PRUPE_ppa015791mg Prunus persica PRUPE_ppa015791mg I
PRUPE_ppa017593mg Prunus persica PRUPE_ppa017593mg I
PRUPE_ppa022199mg Prunus persica PRUPE_ppa022199mg I
SapurV1A.0002s0920 Salix purpurea SapurV1A.0002s0920 I
SapurV1A.0051s0520 Salix purpurea SapurV1A.0051s0520 I
SapurV1A.0063s0420 Salix purpurea SapurV1A.0063s0420 I
SapurV1A.0087s0080 Salix purpurea SapurV1A.0087s0080 I
SapurV1A.0177s0310 Salix purpurea SapurV1A.0177s0310 I
SapurV1A.0326s0130 Salix purpurea SapurV1A.0326s0130 I
SapurV1A.0568s0060 Salix purpurea SapurV1A.0568s0060 I
SapurV1A.0616s0110 Salix purpurea SapurV1A.0616s0110 I
SapurV1A.3612s0010 Salix purpurea SapurV1A.3612s0010 I
Sb04g030770 Sorghum bicolor Sb04g030770 I
Sb04g034800 Sorghum bicolor Sb04g034800 I
Sb06g027465 Sorghum bicolor Sb06g027465 I
Sb10g001350 Sorghum bicolor Sb10g001350 I
SELMODRAFT_442384 Selaginella moellendorffii SELMODRAFT_442384 I
SELMODRAFT_442763 Selaginella moellendorffii SELMODRAFT_442763 I
Si008818m.g Setaria italica Si008818m.g I
Si011853m.g Setaria italica Si011853m.g I
Si017449m.g Setaria italica Si017449m.g I
Si017511m.g Setaria italica Si017511m.g I
Solyc07g041640.2 Solanum lycopersicum Solyc07g041640.2 I
Solyc08g005430.2 Solanum lycopersicum Solyc08g005430.2 I
Solyc08g075950.1 Solanum lycopersicum Solyc08g075950.1 I
Solyc12g096070.1 Solanum lycopersicum Solyc12g096070.1 I
TCM_016120 Theobroma cacao TCM_016120 I
TCM_025561 Theobroma cacao TCM_025561 I
TCM_029130 Theobroma cacao TCM_029130 I
TCM_037550 Theobroma cacao TCM_037550 I
Thhalv10002643m.g Eutrema salsugineum Thhalv10002643m.g I
Thhalv10020873m.g Eutrema salsugineum Thhalv10020873m.g I
Traes_2AL_07B1977B8 Triticum aestivum Traes_2AL_07B1977B8 I
Traes_2DL_3B4943F11 Triticum aestivum Traes_2DL_3B4943F11 I
Traes_6AL_EEA5F4238 Triticum aestivum Traes_6AL_EEA5F4238 I
Traes_6AL_F5BFFCA3E Triticum aestivum Traes_6AL_F5BFFCA3E I
Traes_6DL_4C3F04219 Triticum aestivum Traes_6DL_4C3F04219 I
TRIUR3_01357 Triticum urartu TRIUR3_01357 I
TRIUR3_30418 Triticum urartu TRIUR3_30418 I
VIT_02s0025g04910 Vitis vinifera VIT_02s0025g04910 I
VIT_09s0002g01350 Vitis vinifera VIT_09s0002g01350 I
VIT_11s0016g01250 Vitis vinifera VIT_11s0016g01250 I
VIT_16s0039g01450 Vitis vinifera VIT_16s0039g01450 I