Pavir.Aa02015 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Aa02015 T050650_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.863 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa02015.1.p bHLH 36 86
Pavir.Aa02015.2.p bHLH 1 41

Links

Other bHLH family TFs
Other Panicum virgatum TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29813.m001519 Ricinus communis 29813.m001519 I 0.000
Aquca_002_00663 Aquilegia coerulea Aquca_002_00663 I 0.000
Bo6g095510 Brassica oleracea Bo6g095510 I 0.000
Bo6g108930 Brassica oleracea Bo6g108930 I 0.000
Bostr.10273s0418 Boechera stricta Bostr.10273s0418 I 0.000
Bra004385 Brassica rapa Bra004385 I 0.000
Cagra.0887s0008 Capsella grandiflora Cagra.0887s0008 I 0.000
Carubv10020776m.g Capsella rubella Carubv10020776m.g I 0.000
cassava1317.valid.m1 Manihot esculenta cassava1317.valid.m1 I 0.000
Ca_16379 Cicer arietinum Ca_16379 I 0.000
Ca_18090 Cicer arietinum Ca_18090 I 0.000
chr2.CM0641.320.nc Lotus japonicus chr2.CM0641.320.nc I 0.000
Ciclev10032304m.g Citrus clementina Ciclev10032304m.g I 0.000
Cla010367 Citrullus lanatus Cla010367 I 0.000
Cucsa.284890 Cucumis sativus Cucsa.284890 I 0.000
Eucgr.B03208 Eucalyptus grandis Eucgr.B03208 I 0.000
Eucgr.G02486 Eucalyptus grandis Eucgr.G02486 I 0.000
evm.TU.supercontig_1.48 Carica papaya evm.TU.supercontig_1.48 I 0.000
GLYMA01G06150 Glycine max GLYMA01G06150 I 0.000
GLYMA02G12220 Glycine max GLYMA02G12220 I 0.000
GLYMA07G35630 Glycine max GLYMA07G35630 I 0.000
GLYMA20G04400 Glycine max GLYMA20G04400 I 0.000
Gorai.005G142300 Gossypium raimondii Gorai.005G142300 I 0.000
Gorai.008G179900 Gossypium raimondii Gorai.008G179900 I 0.000
Lus10026617.g Linum usitatissimum Lus10026617.g I 0.000
Lus10030446.g Linum usitatissimum Lus10030446.g I 0.000
Lus10036773.g Linum usitatissimum Lus10036773.g I 0.000
Lus10037156.g Linum usitatissimum Lus10037156.g I 0.000
MDP0000262990 Malus domestica MDP0000262990 I 0.000
MDP0000481448 Malus domestica MDP0000481448 I 0.000
mgf016848m Mimulus guttatus mgf016848m I 0.000
mgf022118m Mimulus guttatus mgf022118m I 0.000
MTR_4g081870 Medicago truncatula MTR_4g081870 I 0.000
MTR_5g041940 Medicago truncatula MTR_5g041940 I 0.000
NAC029 Arabidopsis thaliana AT1G69490 D 0.000
NAP Vitis vinifera VIT_01s0026g02710 I 0.000
OB12G11500 Oryza brachyantha OB12G11500 I 0.000
OPUNC11G01330 Oryza punctata OPUNC11G01330 I 0.000
OPUNC12G01370 Oryza punctata OPUNC12G01370 I 0.000
orange1.1g023197m.g Citrus sinensis orange1.1g023197m.g I 0.000
PGSC0003DMG400002824 Solanum tuberosum PGSC0003DMG400002824 I 0.000
PGSC0003DMG400018435 Solanum tuberosum PGSC0003DMG400018435 I 0.000
PK25119.1 Cannabis sativa PK25119.1 I 0.000
Pm006470 Prunus mume Pm006470 I 0.000
POPTR_0008s08850 Populus trichocarpa POPTR_0008s08850 I 0.000
POPTR_0010s17350 Populus trichocarpa POPTR_0010s17350 I 0.000
PRUPE_ppa009530mg Prunus persica PRUPE_ppa009530mg I 0.000
SapurV1A.0063s0610 Salix purpurea SapurV1A.0063s0610 I 0.000
SapurV1A.0063s0620 Salix purpurea SapurV1A.0063s0620 I 0.000
SapurV1A.0801s0090 Salix purpurea SapurV1A.0801s0090 I 0.000
Sb05g001580 Sorghum bicolor Sb05g001580 I 0.000
Sb08g001940 Sorghum bicolor Sb08g001940 I 0.000
Si010410m.g Setaria italica Si010410m.g I 0.000
Si026530m.g Setaria italica Si026530m.g I 0.000
Solyc04g005610.2 Solanum lycopersicum Solyc04g005610.2 I 0.000
Solyc05g007770.2 Solanum lycopersicum Solyc05g007770.2 I 0.000
TCM_011671 Theobroma cacao TCM_011671 I 0.000
Thhalv10018997m.g Eutrema salsugineum Thhalv10018997m.g I 0.000