Pavir.J27306 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J27306 T050920_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.877 0.812
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.849 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J27306.1.p bHLH 1 48

Links

Other bHLH family TFs
Other Panicum virgatum TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
E(spl)m3-HLH Drosophila melanogaster FBgn0002609 D
E(spl)mbeta-HLH Drosophila melanogaster FBgn0002733 D
GA13073 Drosophila pseudoobscura FBgn0073111 I
GA21008 Drosophila pseudoobscura FBgn0080997 I
GE23647 Drosophila yakuba FBgn0240814 I
GF16799 Drosophila ananassae FBgn0093820 I
GF18225 Drosophila ananassae FBgn0095243 I
GG11454 Drosophila erecta FBgn0103753 I
GG12207 Drosophila erecta FBgn0104499 I
GH18148 Drosophila grimshawi FBgn0125616 I
GH19456 Drosophila grimshawi FBgn0126921 I
GI22910 Drosophila mojavensis FBgn0145637 I
GI24690 Drosophila mojavensis FBgn0147412 I
GJ23906 Drosophila virilis FBgn0210999 I
GK12809 Drosophila willistoni FBgn0214818 I
GK14458 Drosophila willistoni FBgn0216464 I
GL21819 Drosophila persimilis FBgn0159412 I
GL22021 Drosophila persimilis FBgn0159614 I
GM10206 Drosophila sechellia FBgn0165157 I
GM10297 Drosophila sechellia FBgn0165248 I
HLHm3 Drosophila simulans FBgn0082736 I
HLHmbeta Drosophila simulans FBgn0082739 I
HLHmbeta Drosophila yakuba FBgn0082707 I
L798_10924 Zootermopsis nevadensis L798_10924 I
L798_10928 Zootermopsis nevadensis L798_10928 I
LCUP008810 Lucilia cuprina LCUP008810 I
LCUP008813 Lucilia cuprina LCUP008813 I
MDOA002768 Musca domestica MDOA002768 I
MDOA014216 Musca domestica MDOA014216 I
MESCA005144 Megaselia scalaris MESCA005144 I