neurod6 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-969227 T051925_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.894 0.923
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.894 0.923
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.894 0.923
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.894 0.923
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.894 0.923
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.894 0.923
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.894 0.923
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.894 0.923
NEUROD2
M02795_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Jolma et al.(2013)
NEUROD2_1 		0.859 0.904
NEUROD2
M04160_2.00 		Homo sapiens
RVCATATGKY
RMCATATGBY		 SELEX
Yin et al.(2017)
NEUROD2_FL_HT-SELEX 		0.859 0.904
NEUROD2
M08737_2.00 		Homo sapiens
RRCAGMTGG
CCAKCTGYY		 Misc
Kulakovskiy et al.(2013)
NDF2_HUMAN.H11MO.0.B 		0.859 0.904
Neurod2
M08770_2.00 		Mus musculus
RVCAGATGGB
VCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF2_MOUSE.H11MO.0.A 		0.859 0.904
NEUROD2
M04161_2.00 		Homo sapiens
RMCATATGBY
RVCATATGKY		 SELEX
Yin et al.(2017)
NEUROD2_FL_Methyl-HT-SELEX 		0.859 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI21278 bHLH 95 147

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG004656.1 Alligator sinensis Alligator_sinensis_CCG004656.1 I
Cmyd_10000422 Chelonia mydas Cmyd_10000422 I
ENSAMEG00000000235 Ailuropoda melanoleuca ENSAMEG00000000235 I
ENSAMXG00000009564 Astyanax mexicanus ENSAMXG00000009564 I
ENSCSAG00000004521 Chlorocebus sabaeus ENSCSAG00000004521 I
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I
ENSLACG00000003269 Latimeria chalumnae ENSLACG00000003269 I
ENSLOCG00000005321 Lepisosteus oculatus ENSLOCG00000005321 I
ENSMLUG00000028063 Myotis lucifugus ENSMLUG00000028063 I
ENSMPUG00000007099 Mustela putorius furo ENSMPUG00000007099 I
ENSNLEG00000011114 Nomascus leucogenys ENSNLEG00000011114 I
ENSOARG00000004745 Ovis aries ENSOARG00000004745 I
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I
ENSP00000222305-D1 Bos grunniens ENSP00000222305-D1 I
ENSPANG00000011040 Papio anubis ENSPANG00000011040 I
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I
ENSPPYG00000009855 Pongo abelii ENSPPYG00000009855 I
ENSPSIG00000008600 Pelodiscus sinensis ENSPSIG00000008600 I
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I
Myotis_brandtii_USF2_10034396 Myotis brandtii Myotis_brandtii_USF2_10034396 I
Myotis_brandtii_Usf2_10035177 Myotis brandtii Myotis_brandtii_Usf2_10035177 I
Ogr06118 Ophisaurus gracilis Ogr06118 I
Pvit_11612 Pogona vitticeps Pvit_11612 I
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I
usf1 Oryzias latipes ENSORLG00000015402 I
usf1 Takifugu rubripes ENSTRUG00000005343 I
usf1 Gasterosteus aculeatus ENSGACG00000005115 I
Usf2 Rattus norvegicus ENSRNOG00000053725 I
USF2 Sus scrofa ENSSSCG00000002885 I
USF2 Pteropus vampyrus ENSPVAG00000004161 I
USF2 Takifugu rubripes ENSTRUG00000005182 I
USF2 Pan troglodytes ENSPTRG00000010836 I
USF2 Oryctolagus cuniculus ENSOCUG00000026259 I
USF2 Oryzias latipes ENSORLG00000015114 I
USF2 Bos taurus ENSBTAG00000017035 I
USF2 Canis familiaris ENSCAFG00000007054 I
USF2 Callithrix jacchus ENSCJAG00000010451 I
USF2 Cavia porcellus ENSCPOG00000012147 I
usf2 Danio rerio ENSDARG00000020228 I
USF2 Dasypus novemcinctus ENSDNOG00000003072 I
USF2 Equus caballus ENSECAG00000008583 I
USF2 Felis catus ENSFCAG00000008894 I
USF2 Homo sapiens ENSG00000105698 D
USF2 Gasterosteus aculeatus ENSGACG00000012475 I
USF2 Loxodonta africana ENSLAFG00000029360 I
USF2 Microcebus murinus ENSMICG00000001519 I
USF2 Macaca mulatta ENSMMUG00000011291 I
USF2 Monodelphis domestica ENSMODG00000013843 I
Usf2 Mus musculus ENSMUSG00000058239 D
USF2 Anolis carolinensis ENSACAG00000010293 I
USF2 Otolemur garnettii ENSOGAG00000001476 I
USF2 Procavia capensis ENSPCAG00000013941 I
usf2.L Xenopus laevis XB-GENE-991248 I
usf2.S Xenopus laevis XB-GENE-6253011 I