atf6 (Takifugu rubripes)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 ENSTRUG00000006660 T061655_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATF6B
M04375_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_1 		0.823 0.594
ATF6B
M04376_2.00 		Homo sapiens
NRTGACGTGGCR
YGCCACGTCAYN		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_2 		0.823 0.594
ATF6B
M04377_2.00 		Homo sapiens
TGCCACGTGGCR
YGCCACGTGGCA		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_3 		0.823 0.594
ATF6B
M04041_2.00 		Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.1 		0.823 0.594
ATF6B
M04042_2.00 		Homo sapiens
YGMCACGTGKCR
YGMCACGTGKCR		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.2 		0.823 0.594
ATF6B
M04043_2.00 		Homo sapiens
RTGACGTCAYC
GRTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.3 		0.823 0.594
ATF6B
M04044_2.00 		Homo sapiens
MCCACGATGT
ACATCGTGGK		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.4 		0.823 0.594
ATF6B
M04378_2.00 		Homo sapiens
SRTGACGTCAYB
VRTGACGTCAYS		 SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_1 		0.823 0.594
ATF6B
M04379_2.00 		Homo sapiens
BRTGACGTGGCR
YGCCACGTCAYV		 SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_2 		0.823 0.594
ATF6
M04254_2.00 		Homo sapiens
YKRTGACGTGGCAN
NTGCCACGTCAYMR		 SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_1 		0.818 0.703
ATF6
M04255_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_2 		0.818 0.703
ATF6
M04018_2.00 		Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.1 		0.818 0.703
ATF6
M04019_2.00 		Homo sapiens
KAGTCACGTGK
MCACGTGACTM		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.2 		0.818 0.703
ATF6
M04020_2.00 		Homo sapiens
BNRTGACGTCATCA
TGATGACGTCAYNV		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.3 		0.818 0.703
ATF6
M04021_2.00 		Homo sapiens
ACCACGATGTY
RACATCGTGGT		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.4 		0.818 0.703
ATF6
M08790_2.00 		Homo sapiens
VBSSTGACGTGG
CCACGTCASSVB		 Misc
Kulakovskiy et al.(2013)
ATF6A_HUMAN.H11MO.0.B 		0.818 0.703
ATF6
M09947_2.00 		Homo sapiens
TGACGTGG
CCACGTCA		 Transfac
Matys et al.(2006)
V$ATF6_01 		0.818 0.703
ATF6
M04256_2.00 		Homo sapiens
YGRTGACGTGGCRN
NYGCCACGTCAYCR		 SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_1 		0.818 0.703
ATF6
M04257_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_2 		0.818 0.703
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000016370 bZIP 1 64
ENSTRUP00000016371 bZIP 260 323
ENSTRUP00000016372 bZIP 261 324
ENSTRUP00000016373 bZIP 267 330
ENSTRUP00000016374 bZIP 116 179

Links

Other bZIP family TFs
Other Takifugu rubripes TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006534 Ricinus communis 30169.m006534 N
AMTR_s00015p00239460 Amborella trichopoda AMTR_s00015p00239460 N
Aquca_037_00084 Aquilegia coerulea Aquca_037_00084 N
BGIOSGA006748 Oryza indica BGIOSGA006748 N
BGIOSGA020491 Oryza indica BGIOSGA020491 N
BGIOSGA023024 Oryza indica BGIOSGA023024 N
Bo2g046020 Brassica oleracea Bo2g046020 N
Bo2g075510 Brassica oleracea Bo2g075510 N
Bo3g022850 Brassica oleracea Bo3g022850 N
Bo3g060420 Brassica oleracea Bo3g060420 N
Bo6g114730 Brassica oleracea Bo6g114730 N
Bo9g110960 Brassica oleracea Bo9g110960 N
Bostr.2570s0048 Boechera stricta Bostr.2570s0048 N
Bostr.26833s0957 Boechera stricta Bostr.26833s0957 N
Bra001183 Brassica rapa Bra001183 N
Bra003073 Brassica rapa Bra003073 N
Bra008017 Brassica rapa Bra008017 N
Bra022638 Brassica rapa Bra022638 N
Bra029088 Brassica rapa Bra029088 N
BRADI1G38650 Brachypodium distachyon BRADI1G38650 N
BRADI3G09670 Brachypodium distachyon BRADI3G09670 N
Cagra.0084s0068 Capsella grandiflora Cagra.0084s0068 N
Cagra.1772s0035 Capsella grandiflora Cagra.1772s0035 N
Carubv10012751m.g Capsella rubella Carubv10012751m.g N
Carubv10026630m.g Capsella rubella Carubv10026630m.g N
cassava11522.m1 Manihot esculenta cassava11522.m1 N
cassava32469.m1 Manihot esculenta cassava32469.m1 N
cassava34492.m1 Manihot esculenta cassava34492.m1 N
cassava7222.valid.m1 Manihot esculenta cassava7222.valid.m1 N
Ca_03951 Cicer arietinum Ca_03951 N
Ca_13080 Cicer arietinum Ca_13080 N
Ciclev10007150m.g Citrus clementina Ciclev10007150m.g N
Cla004300 Citrullus lanatus Cla004300 N
Cla016479 Citrullus lanatus Cla016479 N
Cucsa.012930 Cucumis sativus Cucsa.012930 N
Cucsa.313010 Cucumis sativus Cucsa.313010 N
Eucgr.A02667 Eucalyptus grandis Eucgr.A02667 N
Eucgr.H03591 Eucalyptus grandis Eucgr.H03591 N
Eucgr.H04738 Eucalyptus grandis Eucgr.H04738 N
evm.TU.supercontig_3.51 Carica papaya evm.TU.supercontig_3.51 N
gene06093-v1.0-hybrid Fragaria vesca gene06093-v1.0-hybrid N
GLYMA04G41710 Glycine max GLYMA04G41710 N
GLYMA06G13081 Glycine max GLYMA06G13081 N
Gorai.004G243100 Gossypium raimondii Gorai.004G243100 N
Gorai.006G054300 Gossypium raimondii Gorai.006G054300 N
Gorai.008G270700 Gossypium raimondii Gorai.008G270700 N
Gorai.011G110900 Gossypium raimondii Gorai.011G110900 N
GRMZM2G045109 Zea mays GRMZM2G045109 N
GRMZM2G064638 Zea mays GRMZM2G064638 N
GRMZM2G085751 Zea mays GRMZM2G085751 N
GSMUA_Achr10G01060_001 Musa acuminata GSMUA_Achr10G01060_001 N
GSMUA_Achr5G06780_001 Musa acuminata GSMUA_Achr5G06780_001 N
GSMUA_Achr8G19870_001 Musa acuminata GSMUA_Achr8G19870_001 N
LPERR02G09400 Leersia perrieri LPERR02G09400 N
LPERR06G13950 Leersia perrieri LPERR06G13950 N
LPERR09G09700 Leersia perrieri LPERR09G09700 N
Lus10001066.g Linum usitatissimum Lus10001066.g N
Lus10007139.g Linum usitatissimum Lus10007139.g N
Lus10014938.g Linum usitatissimum Lus10014938.g N
Lus10039328.g Linum usitatissimum Lus10039328.g N
MDP0000131133 Malus domestica MDP0000131133 N
MDP0000205030 Malus domestica MDP0000205030 N
MDP0000318772 Malus domestica MDP0000318772 N
MDP0000794913 Malus domestica MDP0000794913 N
mgf011108m Mimulus guttatus mgf011108m N
mgf014552m Mimulus guttatus mgf014552m N
MLOC_54435 Hordeum vulgare MLOC_54435 N
MTR_3g090850 Medicago truncatula MTR_3g090850 N
MTR_5g064950 Medicago truncatula MTR_5g064950 N
MUTE Arabidopsis thaliana AT3G06120 N
MUTE Arabidopsis lyrata scaffold_300691.1 N
OB02G19900 Oryza brachyantha OB02G19900 N
OBART02G11110 Oryza barthii OBART02G11110 N
OBART05G28280 Oryza barthii OBART05G28280 N
OBART06G16920 Oryza barthii OBART06G16920 N
OGLUM02G11060 Oryza glumaepatula OGLUM02G11060 N
OGLUM05G29710 Oryza glumaepatula OGLUM05G29710 N
OGLUM06G17990 Oryza glumaepatula OGLUM06G17990 N
OLONG_006958 Oryza longistaminata OLONG_006958 N
OLONG_015104 Oryza longistaminata OLONG_015104 N
OMERI02G11850 Oryza meridionalis OMERI02G11850 N
OMERI06G17780 Oryza meridionalis OMERI06G17780 N
ONIVA02G12460 Oryza nivara ONIVA02G12460 N
ONIVA05G30250 Oryza nivara ONIVA05G30250 N
ONIVA06G19730 Oryza nivara ONIVA06G19730 N
OPUNC02G09860 Oryza punctata OPUNC02G09860 N
OPUNC05G25820 Oryza punctata OPUNC05G25820 N
OPUNC06G15310 Oryza punctata OPUNC06G15310 N
orange1.1g042904m.g Citrus sinensis orange1.1g042904m.g N
ORGLA02G0100500 Oryza glaberrima ORGLA02G0100500 N
ORGLA05G0246000 Oryza glaberrima ORGLA05G0246000 N
ORGLA06G0140300 Oryza glaberrima ORGLA06G0140300 N
ORUFI02G11080 Oryza rufipogon ORUFI02G11080 N
ORUFI05G30290 Oryza rufipogon ORUFI05G30290 N
ORUFI06G17910 Oryza rufipogon ORUFI06G17910 N
OS02G0257500 Oryza sativa OS02G0257500 N
OS05G0597000 Oryza sativa OS05G0597000 N
OS06G0526100 Oryza sativa OS06G0526100 N
Pavir.Aa02723 Panicum virgatum Pavir.Aa02723 N
Pavir.Ab01030 Panicum virgatum Pavir.Ab01030 N
Pavir.Da00918 Panicum virgatum Pavir.Da00918 N
Pavir.Db01402 Panicum virgatum Pavir.Db01402 N
Pavir.Fb01393 Panicum virgatum Pavir.Fb01393 N
Pavir.J25730 Panicum virgatum Pavir.J25730 N
PDK_20s1314901g001 Phoenix dactylifera PDK_20s1314901g001 N
PK01904.1 Cannabis sativa PK01904.1 N
PK27921.1 Cannabis sativa PK27921.1 N
Pm002111 Prunus mume Pm002111 N
Pm008014 Prunus mume Pm008014 N
Pm019784 Prunus mume Pm019784 N
POPTR_0012s01370 Populus trichocarpa POPTR_0012s01370 N
POPTR_0015s06160 Populus trichocarpa POPTR_0015s06160 N
PRUPE_ppa015055mg Prunus persica PRUPE_ppa015055mg N
PRUPE_ppa019299mg Prunus persica PRUPE_ppa019299mg N
PRUPE_ppa020862mg Prunus persica PRUPE_ppa020862mg N
SapurV1A.0058s0640 Salix purpurea SapurV1A.0058s0640 N
SapurV1A.0377s0010 Salix purpurea SapurV1A.0377s0010 N
SapurV1A.1043s0040 Salix purpurea SapurV1A.1043s0040 N
SapurV1A.1227s0030 Salix purpurea SapurV1A.1227s0030 N
Sb04g009390 Sorghum bicolor Sb04g009390 N
Sb10g020490 Sorghum bicolor Sb10g020490 N
Si006640m.g Setaria italica Si006640m.g N
Si017482m.g Setaria italica Si017482m.g N
Solyc01g098720.2 Solanum lycopersicum Solyc01g098720.2 N
Solyc03g007410.2 Solanum lycopersicum Solyc03g007410.2 N
SPCH Arabidopsis lyrata Al_scaffold_0008_1712 N
SPCH Arabidopsis thaliana AT5G53210 N
SPCH Vitis vinifera VIT_16s0050g02500 N
TCM_015345 Theobroma cacao TCM_015345 N
Thhalv10013877m.g Eutrema salsugineum Thhalv10013877m.g N
Thhalv10022251m.g Eutrema salsugineum Thhalv10022251m.g N
Traes_7DL_1717A9083 Triticum aestivum Traes_7DL_1717A9083 N