SPCH (Arabidopsis lyrata)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Al_scaffold_0008_1712 T030460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0008_1712 bHLH 102 153

Links

Other bHLH family TFs
Other Arabidopsis lyrata TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00015p00239460 Amborella trichopoda AMTR_s00015p00239460 N 0.914
SPCH Arabidopsis thaliana AT5G53210 N 0.914
BGIOSGA006748 Oryza indica BGIOSGA006748 N 0.914
Bo2g046020 Brassica oleracea Bo2g046020 N 0.914
Bo3g022850 Brassica oleracea Bo3g022850 N 0.914
Bo9g110960 Brassica oleracea Bo9g110960 N 0.914
Bra003073 Brassica rapa Bra003073 N 0.914
Bra022638 Brassica rapa Bra022638 N 0.914
Bra029088 Brassica rapa Bra029088 N 0.914
BRADI1G38650 Brachypodium distachyon BRADI1G38650 N 0.914
GLYMA04G41710 Glycine max GLYMA04G41710 N 0.914
GLYMA06G13081 Glycine max GLYMA06G13081 N 0.914
GRMZM2G064638 Zea mays GRMZM2G064638 N 0.914
GRMZM2G085751 Zea mays GRMZM2G085751 N 0.914
GSMUA_Achr10G01060_001 Musa acuminata GSMUA_Achr10G01060_001 N 0.914
GSMUA_Achr8G19870_001 Musa acuminata GSMUA_Achr8G19870_001 N 0.914
LPERR02G09400 Leersia perrieri LPERR02G09400 N 0.914
MLOC_54435 Hordeum vulgare MLOC_54435 N 0.914
MTR_3g090850 Medicago truncatula MTR_3g090850 N 0.914
OB02G19900 Oryza brachyantha OB02G19900 N 0.914
OBART02G11110 Oryza barthii OBART02G11110 N 0.914
OGLUM02G11060 Oryza glumaepatula OGLUM02G11060 N 0.914
OMERI02G11850 Oryza meridionalis OMERI02G11850 N 0.914
ONIVA02G12460 Oryza nivara ONIVA02G12460 N 0.914
OPUNC02G09860 Oryza punctata OPUNC02G09860 N 0.914
ORGLA02G0100500 Oryza glaberrima ORGLA02G0100500 N 0.914
ORUFI02G11080 Oryza rufipogon ORUFI02G11080 N 0.914
OS02G0257500 Oryza sativa OS02G0257500 N 0.914
POPTR_0012s01370 Populus trichocarpa POPTR_0012s01370 N 0.914
POPTR_0015s06160 Populus trichocarpa POPTR_0015s06160 N 0.914
Sb04g009390 Sorghum bicolor Sb04g009390 N 0.914
Sb10g020490 Sorghum bicolor Sb10g020490 N 0.914
Si006640m.g Setaria italica Si006640m.g N 0.914
Si017482m.g Setaria italica Si017482m.g N 0.914
Solyc03g007410.2 Solanum lycopersicum Solyc03g007410.2 N 0.914
TCM_015345 Theobroma cacao TCM_015345 N 0.914
Traes_7DL_1717A9083 Triticum aestivum Traes_7DL_1717A9083 N 0.914
SPCH Vitis vinifera VIT_16s0050g02500 N 0.914
Ca_03951 Cicer arietinum Ca_03951 N 0.914
30169.m006534 Ricinus communis 30169.m006534 N 0.914
cassava32469.m1 Manihot esculenta cassava32469.m1 N 0.914
cassava7222.valid.m1 Manihot esculenta cassava7222.valid.m1 N 0.914
mgf014552m Mimulus guttatus mgf014552m N 0.914
Bostr.26833s0957 Boechera stricta Bostr.26833s0957 N 0.914
Cagra.0084s0068 Capsella grandiflora Cagra.0084s0068 N 0.914
Carubv10026630m.g Capsella rubella Carubv10026630m.g N 0.914
Eucgr.A02667 Eucalyptus grandis Eucgr.A02667 N 0.914
Gorai.008G270700 Gossypium raimondii Gorai.008G270700 N 0.914
Pavir.Aa02723 Panicum virgatum Pavir.Aa02723 N 0.914
Pavir.Ab01030 Panicum virgatum Pavir.Ab01030 N 0.914
Pavir.Da00918 Panicum virgatum Pavir.Da00918 N 0.914
Pavir.Db01402 Panicum virgatum Pavir.Db01402 N 0.914
SapurV1A.1227s0030 Salix purpurea SapurV1A.1227s0030 N 0.914
Thhalv10013877m.g Eutrema salsugineum Thhalv10013877m.g N 0.914
PDK_20s1314901g001 Phoenix dactylifera PDK_20s1314901g001 N 0.914
BGIOSGA023024 Oryza indica BGIOSGA023024 N 0.911
BRADI3G09670 Brachypodium distachyon BRADI3G09670 N 0.911
LPERR06G13950 Leersia perrieri LPERR06G13950 N 0.911
OBART06G16920 Oryza barthii OBART06G16920 N 0.911
OGLUM06G17990 Oryza glumaepatula OGLUM06G17990 N 0.911
OLONG_015104 Oryza longistaminata OLONG_015104 N 0.911
OMERI06G17780 Oryza meridionalis OMERI06G17780 N 0.911
ONIVA06G19730 Oryza nivara ONIVA06G19730 N 0.911
OPUNC06G15310 Oryza punctata OPUNC06G15310 N 0.911
ORGLA06G0140300 Oryza glaberrima ORGLA06G0140300 N 0.911
ORUFI06G17910 Oryza rufipogon ORUFI06G17910 N 0.911
OS06G0526100 Oryza sativa OS06G0526100 N 0.911
Ciclev10007150m.g Citrus clementina Ciclev10007150m.g N 0.911
orange1.1g042904m.g Citrus sinensis orange1.1g042904m.g N 0.911
PK01904.1 Cannabis sativa PK01904.1 N 0.911
mgf011108m Mimulus guttatus mgf011108m N 0.903
GRMZM2G045109 Zea mays GRMZM2G045109 N 0.902
Cla004300 Citrullus lanatus Cla004300 N 0.902
Cucsa.012930 Cucumis sativus Cucsa.012930 N 0.902
Bostr.2570s0048 Boechera stricta Bostr.2570s0048 N 0.901
GSMUA_Achr5G06780_001 Musa acuminata GSMUA_Achr5G06780_001 N 0.894
PGSC0003DMG400009101 Solanum tuberosum PGSC0003DMG400009101 N 0.894
PRUPE_ppa015055mg Prunus persica PRUPE_ppa015055mg N 0.894
Pm019784 Prunus mume Pm019784 N 0.894
MDP0000131133 Malus domestica MDP0000131133 N 0.894
Bo3g060420 Brassica oleracea Bo3g060420 N 0.888
Bra001183 Brassica rapa Bra001183 N 0.888
Ca_13080 Cicer arietinum Ca_13080 N 0.887
Aquca_037_00084 Aquilegia coerulea Aquca_037_00084 N 0.884
Lus10014938.g Linum usitatissimum Lus10014938.g N 0.884
evm.TU.supercontig_3.51 Carica papaya evm.TU.supercontig_3.51 N 0.883
SapurV1A.0377s0010 Salix purpurea SapurV1A.0377s0010 N 0.881
SapurV1A.1043s0040 Salix purpurea SapurV1A.1043s0040 N 0.881
PRUPE_ppa019299mg Prunus persica PRUPE_ppa019299mg N 0.877
Pm008014 Prunus mume Pm008014 N 0.877
gene06093-v1.0-hybrid Fragaria vesca gene06093-v1.0-hybrid N 0.877
MDP0000205030 Malus domestica MDP0000205030 N 0.877
MDP0000318772 Malus domestica MDP0000318772 N 0.877
MUTE Arabidopsis thaliana AT3G06120 N 0.876
MUTE Arabidopsis lyrata scaffold_300691.1 N 0.876
Cagra.1772s0035 Capsella grandiflora Cagra.1772s0035 N 0.876
Carubv10012751m.g Capsella rubella Carubv10012751m.g N 0.876
Eucgr.H03591 Eucalyptus grandis Eucgr.H03591 N 0.876
Gorai.006G054300 Gossypium raimondii Gorai.006G054300 N 0.876
Thhalv10022251m.g Eutrema salsugineum Thhalv10022251m.g N 0.876
Bo6g114730 Brassica oleracea Bo6g114730 N 0.870
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.870
cassava11522.m1 Manihot esculenta cassava11522.m1 N 0.864
Lus10001066.g Linum usitatissimum Lus10001066.g N 0.864
Lus10039328.g Linum usitatissimum Lus10039328.g N 0.864
Cla016479 Citrullus lanatus Cla016479 N 0.860
Cucsa.313010 Cucumis sativus Cucsa.313010 N 0.860
Lus10007139.g Linum usitatissimum Lus10007139.g N 0.860
GLYMA10G29760 Glycine max GLYMA10G29760 N 0.857
MTR_1g028470 Medicago truncatula MTR_1g028470 N 0.854
GLYMA13G27880 Glycine max GLYMA13G27880 N 0.852
GLYMA15G11130 Glycine max GLYMA15G11130 N 0.852
MTR_2g022280 Medicago truncatula MTR_2g022280 N 0.852
POPTR_0008s20720 Populus trichocarpa POPTR_0008s20720 N 0.852
TCM_020520 Theobroma cacao TCM_020520 N 0.852
MUTE Vitis vinifera VIT_05s0020g02700 N 0.852
29844.m003312 Ricinus communis 29844.m003312 N 0.852
cassava3377.m1 Manihot esculenta cassava3377.m1 N 0.852
Ciclev10005947m.g Citrus clementina Ciclev10005947m.g N 0.852
SapurV1A.0022s0230 Salix purpurea SapurV1A.0022s0230 N 0.852
chr6.CM0139.250.nd Lotus japonicus chr6.CM0139.250.nd N 0.852
Aquca_135_00008 Aquilegia coerulea Aquca_135_00008 N 0.851
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.849
FAMA Arabidopsis thaliana AT3G24140 N 0.849
Bo1g101110 Brassica oleracea Bo1g101110 N 0.849
Bo3g082010 Brassica oleracea Bo3g082010 N 0.849
Bo7g037540 Brassica oleracea Bo7g037540 N 0.849
Bra001929 Brassica rapa Bra001929 N 0.849
Bra028357 Brassica rapa Bra028357 N 0.849
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.849
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.849
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.849
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.849
GLYMA13G08740 Glycine max GLYMA13G08740 N 0.849
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.849
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.849
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.849
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.849
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.849
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.849
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.849
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.849
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.849
FMA Arabidopsis lyrata scaffold_302925.1 N 0.849
SELMODRAFT_410402 Selaginella moellendorffii SELMODRAFT_410402 N 0.849
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.849
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.849
SELMODRAFT_451148 Selaginella moellendorffii SELMODRAFT_451148 N 0.849
Solyc01g080050.2 Solanum lycopersicum Solyc01g080050.2 N 0.849
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.849
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.849
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.849
TCM_015694 Theobroma cacao TCM_015694 N 0.849
TCM_020336 Theobroma cacao TCM_020336 N 0.849
FMA Vitis vinifera VIT_05s0029g00050 N 0.849
Ca_12363 Cicer arietinum Ca_12363 N 0.849
Ca_16010 Cicer arietinum Ca_16010 N 0.849
Cla021744 Citrullus lanatus Cla021744 N 0.849
Pm009474 Prunus mume Pm009474 N 0.849
Pm023207 Prunus mume Pm023207 N 0.849
29904.m002956 Ricinus communis 29904.m002956 N 0.849
30054.m000819 Ricinus communis 30054.m000819 N 0.849
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.849
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.849
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.849
mgf015694m Mimulus guttatus mgf015694m N 0.849
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.849
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.849
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.849
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.849
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.849
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.849
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.849
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.849
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.849
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.849
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.849
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.849
MDP0000646823 Malus domestica MDP0000646823 N 0.849
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.849
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.849
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.849
PK04856.1 Cannabis sativa PK04856.1 N 0.849
PK28391.1 Cannabis sativa PK28391.1 N 0.849
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.846
BHLH96 Arabidopsis thaliana AT1G72210 N 0.846
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.846
Bo5g038570 Brassica oleracea Bo5g038570 N 0.846
Bo6g092570 Brassica oleracea Bo6g092570 N 0.846
Bo7g057920 Brassica oleracea Bo7g057920 N 0.846
Bo8g071490 Brassica oleracea Bo8g071490 N 0.846
Bra003886 Brassica rapa Bra003886 N 0.846
Bra012329 Brassica rapa Bra012329 N 0.846
Bra016080 Brassica rapa Bra016080 N 0.846
Bra016377 Brassica rapa Bra016377 N 0.846
Bra040856 Brassica rapa Bra040856 N 0.846
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.846
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.846
GLYMA03G39990 Glycine max GLYMA03G39990 N 0.846
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.846
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.846
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.846
GLYMA19G42520 Glycine max GLYMA19G42520 N 0.846
GLYMA20G37550 Glycine max GLYMA20G37550 N 0.846
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.846
GRMZM2G417164 Zea mays GRMZM2G417164 N 0.846
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.846
GSMUA_Achr7G21110_001 Musa acuminata GSMUA_Achr7G21110_001 N 0.846
GSMUA_Achr7G21190_001 Musa acuminata GSMUA_Achr7G21190_001 N 0.846
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.846
LPERR05G23890 Leersia perrieri LPERR05G23890 N 0.846
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.846
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.846
MTR_7g113830 Medicago truncatula MTR_7g113830 N 0.846
OB05G35750 Oryza brachyantha OB05G35750 N 0.846
OB09G19960 Oryza brachyantha OB09G19960 N 0.846
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.846
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.846
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.846
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.846
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.846
OS09G0468700 Oryza sativa OS09G0468700 N 0.846
PGSC0003DMG400028578 Solanum tuberosum PGSC0003DMG400028578 N 0.846
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.846
POPTR_0005s04160 Populus trichocarpa POPTR_0005s04160 N 0.846
POPTR_0013s02680 Populus trichocarpa POPTR_0013s02680 N 0.846
PRUPE_ppa009461mg Prunus persica PRUPE_ppa009461mg N 0.846
PRUPE_ppa011095mg Prunus persica PRUPE_ppa011095mg N 0.846
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.846
Sb09g030930 Sorghum bicolor Sb09g030930 N 0.846
Si004438m.g Setaria italica Si004438m.g N 0.846
Si013925m.g Setaria italica Si013925m.g N 0.846
TCM_026599 Theobroma cacao TCM_026599 N 0.846
TCM_034439 Theobroma cacao TCM_034439 N 0.846
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.846
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.846
VIT_14s0128g00110 Vitis vinifera VIT_14s0128g00110 N 0.846
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.846
Ca_01181 Cicer arietinum Ca_01181 N 0.846
Cla005338 Citrullus lanatus Cla005338 N 0.846
Cla020173 Citrullus lanatus Cla020173 N 0.846
Cla022458 Citrullus lanatus Cla022458 N 0.846
Pm003380 Prunus mume Pm003380 N 0.846
Pm004489 Prunus mume Pm004489 N 0.846
30128.m008737 Ricinus communis 30128.m008737 N 0.846
cassava13431.valid.m1 Manihot esculenta cassava13431.valid.m1 N 0.846
cassava19507.valid.m1 Manihot esculenta cassava19507.valid.m1 N 0.846
cassava22781.valid.m1 Manihot esculenta cassava22781.valid.m1 N 0.846
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.846
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.846
Cucsa.091670 Cucumis sativus Cucsa.091670 N 0.846
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.846
Cucsa.163550 Cucumis sativus Cucsa.163550 N 0.846
Aquca_005_00478 Aquilegia coerulea Aquca_005_00478 N 0.846
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.846
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.846
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.846
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.846
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.846
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.846
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.846
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.846
Eucgr.H04468 Eucalyptus grandis Eucgr.H04468 N 0.846
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.846
evm.TU.supercontig_48.15 Carica papaya evm.TU.supercontig_48.15 N 0.846
gene12030-v1.0-hybrid Fragaria vesca gene12030-v1.0-hybrid N 0.846
gene22289-v1.0-hybrid Fragaria vesca gene22289-v1.0-hybrid N 0.846
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.846
Lus10029950.g Linum usitatissimum Lus10029950.g N 0.846
MDP0000267178 Malus domestica MDP0000267178 N 0.846
MDP0000672131 Malus domestica MDP0000672131 N 0.846
MDP0000944210 Malus domestica MDP0000944210 N 0.846
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.846
orange1.1g036531m.g Citrus sinensis orange1.1g036531m.g N 0.846
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.846
Pavir.Ea00071 Panicum virgatum Pavir.Ea00071 N 0.846
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.846
SapurV1A.0092s0130 Salix purpurea SapurV1A.0092s0130 N 0.846
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.846
SapurV1A.1055s0160 Salix purpurea SapurV1A.1055s0160 N 0.846
SapurV1A.1124s0170 Salix purpurea SapurV1A.1124s0170 N 0.846
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.846
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.846
PK14736.1 Cannabis sativa PK14736.1 N 0.846
PK21294.1 Cannabis sativa PK21294.1 N 0.846
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.846
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.846
chr5.CM0211.190.nc Lotus japonicus chr5.CM0211.190.nc N 0.846
chr6.CM0738.340.nd Lotus japonicus chr6.CM0738.340.nd N 0.846
Bo1g150080 Brassica oleracea Bo1g150080 N 0.845
Bo5g144750 Brassica oleracea Bo5g144750 N 0.845
Bra020775 Brassica rapa Bra020775 N 0.845
Bra040234 Brassica rapa Bra040234 N 0.845
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.845
PK18533.1 Cannabis sativa PK18533.1 N 0.845
chr1.CM0544.580.nd Lotus japonicus chr1.CM0544.580.nd N 0.845