CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra040234
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra040234
T031577_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra040234.1-P
bHLH
1
50
MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKEMQ
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
110 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g150080
Brassica oleracea
Bo1g150080
N
0.914
Bo5g144750
Brassica oleracea
Bo5g144750
N
0.914
Bra020775
Brassica rapa
Bra020775
N
0.914
MUTE
Arabidopsis thaliana
AT3G06120
N
0.882
MUTE
Arabidopsis lyrata
scaffold_300691.1
N
0.882
Cagra.1772s0035
Capsella grandiflora
Cagra.1772s0035
N
0.882
Carubv10012751m.g
Capsella rubella
Carubv10012751m.g
N
0.882
Eucgr.H03591
Eucalyptus grandis
Eucgr.H03591
N
0.882
Gorai.006G054300
Gossypium raimondii
Gorai.006G054300
N
0.882
Thhalv10022251m.g
Eutrema salsugineum
Thhalv10022251m.g
N
0.882
Bo3g060420
Brassica oleracea
Bo3g060420
N
0.871
Bra001183
Brassica rapa
Bra001183
N
0.871
PK18533.1
Cannabis sativa
PK18533.1
N
0.866
GLYMA13G27880
Glycine max
GLYMA13G27880
N
0.858
GLYMA15G11130
Glycine max
GLYMA15G11130
N
0.858
MTR_2g022280
Medicago truncatula
MTR_2g022280
N
0.858
POPTR_0008s20720
Populus trichocarpa
POPTR_0008s20720
N
0.858
TCM_020520
Theobroma cacao
TCM_020520
N
0.858
MUTE
Vitis vinifera
VIT_05s0020g02700
N
0.858
29844.m003312
Ricinus communis
29844.m003312
N
0.858
cassava3377.m1
Manihot esculenta
cassava3377.m1
N
0.858
Bostr.2570s0048
Boechera stricta
Bostr.2570s0048
N
0.858
Ciclev10005947m.g
Citrus clementina
Ciclev10005947m.g
N
0.858
SapurV1A.0022s0230
Salix purpurea
SapurV1A.0022s0230
N
0.858
chr6.CM0139.250.nd
Lotus japonicus
chr6.CM0139.250.nd
N
0.858
mgf011108m
Mimulus guttatus
mgf011108m
N
0.856
Solyc01g080050.2
Solanum lycopersicum
Solyc01g080050.2
N
0.855
GRMZM2G417164
Zea mays
GRMZM2G417164
N
0.852
GSMUA_Achr7G21110_001
Musa acuminata
GSMUA_Achr7G21110_001
N
0.852
GSMUA_Achr7G21190_001
Musa acuminata
GSMUA_Achr7G21190_001
N
0.852
LPERR05G23890
Leersia perrieri
LPERR05G23890
N
0.852
OB05G35750
Oryza brachyantha
OB05G35750
N
0.852
Sb09g030930
Sorghum bicolor
Sb09g030930
N
0.852
Si004438m.g
Setaria italica
Si004438m.g
N
0.852
Pavir.Ea00071
Panicum virgatum
Pavir.Ea00071
N
0.852
SELMODRAFT_410402
Selaginella moellendorffii
SELMODRAFT_410402
N
0.850
SELMODRAFT_451148
Selaginella moellendorffii
SELMODRAFT_451148
N
0.850
cassava11522.m1
Manihot esculenta
cassava11522.m1
N
0.847
SPCH
Arabidopsis lyrata
Al_scaffold_0008_1712
N
0.845
AMTR_s00015p00239460
Amborella trichopoda
AMTR_s00015p00239460
N
0.845
SPCH
Arabidopsis thaliana
AT5G53210
N
0.845
BGIOSGA006748
Oryza indica
BGIOSGA006748
N
0.845
Bo2g046020
Brassica oleracea
Bo2g046020
N
0.845
Bo3g022850
Brassica oleracea
Bo3g022850
N
0.845
Bo9g110960
Brassica oleracea
Bo9g110960
N
0.845
Bra003073
Brassica rapa
Bra003073
N
0.845
Bra022638
Brassica rapa
Bra022638
N
0.845
Bra029088
Brassica rapa
Bra029088
N
0.845
BRADI1G38650
Brachypodium distachyon
BRADI1G38650
N
0.845
GLYMA04G41710
Glycine max
GLYMA04G41710
N
0.845
GLYMA06G13081
Glycine max
GLYMA06G13081
N
0.845
GRMZM2G064638
Zea mays
GRMZM2G064638
N
0.845
GRMZM2G085751
Zea mays
GRMZM2G085751
N
0.845
GSMUA_Achr10G01060_001
Musa acuminata
GSMUA_Achr10G01060_001
N
0.845
GSMUA_Achr8G19870_001
Musa acuminata
GSMUA_Achr8G19870_001
N
0.845
LPERR02G09400
Leersia perrieri
LPERR02G09400
N
0.845
MLOC_54435
Hordeum vulgare
MLOC_54435
N
0.845
MTR_3g090850
Medicago truncatula
MTR_3g090850
N
0.845
OB02G19900
Oryza brachyantha
OB02G19900
N
0.845
OBART02G11110
Oryza barthii
OBART02G11110
N
0.845
OGLUM02G11060
Oryza glumaepatula
OGLUM02G11060
N
0.845
OMERI02G11850
Oryza meridionalis
OMERI02G11850
N
0.845
ONIVA02G12460
Oryza nivara
ONIVA02G12460
N
0.845
OPUNC02G09860
Oryza punctata
OPUNC02G09860
N
0.845
ORGLA02G0100500
Oryza glaberrima
ORGLA02G0100500
N
0.845
ORUFI02G11080
Oryza rufipogon
ORUFI02G11080
N
0.845
OS02G0257500
Oryza sativa
OS02G0257500
N
0.845
POPTR_0012s01370
Populus trichocarpa
POPTR_0012s01370
N
0.845
POPTR_0015s06160
Populus trichocarpa
POPTR_0015s06160
N
0.845
Sb04g009390
Sorghum bicolor
Sb04g009390
N
0.845
Sb10g020490
Sorghum bicolor
Sb10g020490
N
0.845
Si006640m.g
Setaria italica
Si006640m.g
N
0.845
Si017482m.g
Setaria italica
Si017482m.g
N
0.845
Solyc03g007410.2
Solanum lycopersicum
Solyc03g007410.2
N
0.845
TCM_015345
Theobroma cacao
TCM_015345
N
0.845
Traes_7DL_1717A9083
Triticum aestivum
Traes_7DL_1717A9083
N
0.845
SPCH
Vitis vinifera
VIT_16s0050g02500
N
0.845
Ca_03951
Cicer arietinum
Ca_03951
N
0.845
30169.m006534
Ricinus communis
30169.m006534
N
0.845
cassava32469.m1
Manihot esculenta
cassava32469.m1
N
0.845
cassava7222.valid.m1
Manihot esculenta
cassava7222.valid.m1
N
0.845
mgf014552m
Mimulus guttatus
mgf014552m
N
0.845
Bostr.26833s0957
Boechera stricta
Bostr.26833s0957
N
0.845
Cagra.0084s0068
Capsella grandiflora
Cagra.0084s0068
N
0.845
Carubv10026630m.g
Capsella rubella
Carubv10026630m.g
N
0.845
Eucgr.A02667
Eucalyptus grandis
Eucgr.A02667
N
0.845
Gorai.008G270700
Gossypium raimondii
Gorai.008G270700
N
0.845
Pavir.Aa02723
Panicum virgatum
Pavir.Aa02723
N
0.845
Pavir.Ab01030
Panicum virgatum
Pavir.Ab01030
N
0.845
Pavir.Da00918
Panicum virgatum
Pavir.Da00918
N
0.845
Pavir.Db01402
Panicum virgatum
Pavir.Db01402
N
0.845
SapurV1A.1227s0030
Salix purpurea
SapurV1A.1227s0030
N
0.845
Thhalv10013877m.g
Eutrema salsugineum
Thhalv10013877m.g
N
0.845
PDK_20s1314901g001
Phoenix dactylifera
PDK_20s1314901g001
N
0.845
GLYMA13G08740
Glycine max
GLYMA13G08740
N
0.843
BGIOSGA023024
Oryza indica
BGIOSGA023024
N
0.842
BRADI3G09670
Brachypodium distachyon
BRADI3G09670
N
0.842
LPERR06G13950
Leersia perrieri
LPERR06G13950
N
0.842
OBART06G16920
Oryza barthii
OBART06G16920
N
0.842
OGLUM06G17990
Oryza glumaepatula
OGLUM06G17990
N
0.842
OLONG_015104
Oryza longistaminata
OLONG_015104
N
0.842
OMERI06G17780
Oryza meridionalis
OMERI06G17780
N
0.842
ONIVA06G19730
Oryza nivara
ONIVA06G19730
N
0.842
OPUNC06G15310
Oryza punctata
OPUNC06G15310
N
0.842
ORGLA06G0140300
Oryza glaberrima
ORGLA06G0140300
N
0.842
ORUFI06G17910
Oryza rufipogon
ORUFI06G17910
N
0.842
OS06G0526100
Oryza sativa
OS06G0526100
N
0.842
Ciclev10007150m.g
Citrus clementina
Ciclev10007150m.g
N
0.842
orange1.1g042904m.g
Citrus sinensis
orange1.1g042904m.g
N
0.842
PK01904.1
Cannabis sativa
PK01904.1
N
0.842