Bo3g023850 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo3g023850 T081726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YY1
M01443_2.00 		Arabidopsis thaliana
NNNVCWYNN
NNRWGBNNN		 PBM
Najafabadi et al.(2015a)
pTH11160 		0.817 0.922
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g023850.1 C2H2 ZF 317 341
Bo3g023850.1 C2H2 ZF 346 370
Bo3g023850.1 C2H2 ZF 376 400
Bo3g023850.1 C2H2 ZF 406 431
Bo3g023850.1 C2H2 ZF 470 495

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB06565.1 Alternaria brassicicola AB06565.1 N
CIMG_02171 Coccidioides immitis CIMG_02171 I
CMQ_6356 Grosmannia clavigera CMQ_6356 N
CPC735_038450 Coccidioides posadasii CPC735_038450 I
estExt_fgenesh1_kg.C_40052 Cochliobolus heterostrophus C5 estExt_fgenesh1_kg.C_40052 N
EURHEDRAFT_454059 Aspergillus ruber EURHEDRAFT_454059 N
MGG_09200 Magnaporthe oryzae MGG_09200 I
PTRG_07080 Pyrenophora triticirepentis PTRG_07080 N
PTT_06377 Pyrenophora teres PTT_06377 N
SETTUDRAFT_24029 Setosphaeria turcica SETTUDRAFT_24029 N
SNOG_01064 Stagonospora nodorum SNOG_01064 N
SNOG_01064 Phaeosphaeria nodorum SNOG_01064 N
UCRNP2_10299 Neofusicoccum parvum UCRNP2_10299 N
UREG_01543 Uncinocarpus reesii UREG_01543 I