Bo9g183170 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo9g183170 T081802_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.827 0.976
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.797 0.952
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.797 0.857
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.797 0.857
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.797 0.857
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.792 0.881
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.792 0.881
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.792 0.833
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.792 0.833
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.774 0.833
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.774 0.833
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.764 0.881
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.764 0.881
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g183170.1 C2H2 ZF 159 180
Bo9g183170.1 C2H2 ZF 180 205

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

641 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL004255 Aedes aegypti AAEL004255 I
AAEL013770 Aedes aegypti AAEL013770 I
AATE010559 Anopheles atroparvus AATE010559 I
ACEP26221 Atta cephalotes ACEP26221 I
ACOM039487 Anopheles coluzzii ACOM039487 I
ACUA020082 Anopheles culicifacies ACUA020082 I
ADAC005262 Anopheles darlingi ADAC005262 I
AFAF006673 Anopheles farauti AFAF006673 I
AFUN002606 Anopheles funestus AFUN002606 I
AGAP006592 Anopheles gambiae AGAP006592 I
AMEC005588 Anopheles melas AMEC005588 I
AMEM000073 Anopheles merus AMEM000073 I
ASIS005657 Anopheles sinensis ASIS005657 I
ASU_05469 Ascaris suum ASU_05469 I
BGIBMGA000319 Bombyx mori BGIBMGA000319 I
Blimp-1 Drosophila melanogaster FBgn0035625 D
Bm3574 Brugia malayi Bm3574 I
BTMF_0000836601 Brugia timori BTMF_0000836601 I
BXY_0993100 Bursaphelenchus xylophilus BXY_0993100 I
Cflo_04377--XP_391847.3_APIME Camponotus floridanus Cflo_04377--XP_391847.3_APIME I
CLEC009125 Cimex lectularius CLEC009125 I
CPIJ007425 Culex quinquefasciatus CPIJ007425 I
CpipJ_CPIJ007425 Culex pipiens CpipJ_CPIJ007425 I
D917_07972 Trichinella nativa D917_07972 I
D918_01175 Trichuris suis D918_01175 I
DAPPUDRAFT_319330 Daphnia pulex DAPPUDRAFT_319330 I
DME_0000608401 Dracunculus medinensis DME_0000608401 I
EFV52614 Trichinella spiralis EFV52614 I
EVEC_0000549701 Enterobius vermicularis EVEC_0000549701 I
GA23469 Drosophila pseudoobscura FBgn0244871 I
GB51060 Apis mellifera GB51060 I
GE21501 Drosophila yakuba FBgn0238758 I
GF23985 Drosophila ananassae FBgn0100979 I
GG15278 Drosophila erecta FBgn0107530 I
GH16462 Drosophila grimshawi FBgn0123933 I
GJ13412 Drosophila virilis FBgn0200637 I
GK17303 Drosophila willistoni FBgn0219302 I
GM14713 Drosophila sechellia FBgn0169634 I
HHAL002221-PA Halyomorpha halys HHAL002221-PA I
HMEL007072 Heliconius melpomene HMEL007072 I
KGM_16647 Danaus plexippus KGM_16647 I
L596_g21750 Steinernema carpocapsae L596_g21750 I
L798_14234 Zootermopsis nevadensis L798_14234 I
L889_g7623 Steinernema feltiae L889_g7623 I
L892_g2443 Steinernema scapterisci L892_g2443 I
L893_g23908 Steinernema glaseri L893_g23908 I
L898_g18820 Steinernema monticolum L898_g18820 I
LCUP008191 Lucilia cuprina LCUP008191 I
LOAG_11444 Loa loa LOAG_11444 I
MCINX009345 Melitaea cinxia MCINX009345 I
MDOA000384 Musca domestica MDOA000384 I
MhA1_Contig1748.frz3.gene3 Meloidogyne hapla MhA1_Contig1748.frz3.gene3 N
Minc14190 Meloidogyne incognita Minc14190 N
nDi.2.2.2.g10740 Dirofilaria immitis nDi.2.2.2.g10740 I
nLs.2.1.2.g09168 Litomosoides sigmodontis nLs.2.1.2.g09168 I
Ppa-blmp-1 Pristionchus pacificus PPA04977 N
PPAI008567 Phlebotomus papatasi PPAI008567 I
RPRC001983 Rhodnius prolixus RPRC001983 I
scaffold607-EXSNAP2012.2 Pristionchus exspectatus scaffold607-EXSNAP2012.2 N
SINV14078 Solenopsis invicta SINV14078 I
SMAR011793 Strigamia maritima SMAR011793 I
SMUV_0001104401 Syphacia muris SMUV_0001104401 I
SPAL_0000884500 Strongyloides papillosus SPAL_0000884500 I
SSTP_0000757300 Strongyloides stercoralis SSTP_0000757300 I
SVE_1713000 Strongyloides venezuelensis SVE_1713000 I
TCLT_0000472801 Thelazia callipaeda TCLT_0000472801 I
TCNE_0001220201 Toxocara canis TCNE_0001220201 I
TMUE_s0064002300 Trichuris muris TMUE_s0064002300 I
TTRE_0000156401 Trichuris trichiura TTRE_0000156401 I
WBGene00238199 Onchocerca volvulus WBGene00238199 I
WUBG_04696 Wuchereria bancrofti WUBG_04696 I