Bra003148 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra003148 T081883_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.822 0.957
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.822 0.957
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.772 0.804
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.766 0.717
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.762 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.762 0.739
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003148.1-P C2H2 ZF 48 70
Bra003148.1-P C2H2 ZF 92 114

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

313 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA019942 Oryza indica BGIOSGA019942 I 0.000
Bo3g004060 Brassica oleracea Bo3g004060 I 0.000
Bo9g175780 Brassica oleracea Bo9g175780 I 0.000
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I 0.000
Bostr.26959s0025 Boechera stricta Bostr.26959s0025 I 0.000
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I 0.000
Carubv10003744m.g Capsella rubella Carubv10003744m.g I 0.000
Ciclev10031441m.g Citrus clementina Ciclev10031441m.g I 0.000
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I 0.000
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I 0.000
F775_16855 Aegilops tauschii F775_16855 I 0.000
F775_24386 Aegilops tauschii F775_24386 I 0.000
GLYMA03G29825 Glycine max GLYMA03G29825 I 0.000
GLYMA19G32715 Glycine max GLYMA19G32715 I 0.000
GRMZM2G029979 Zea mays GRMZM2G029979 I 0.000
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I 0.000
LPERR05G14450 Leersia perrieri LPERR05G14450 I 0.000
MLOC_58614 Hordeum vulgare MLOC_58614 I 0.000
OBART05G18270 Oryza barthii OBART05G18270 I 0.000
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I 0.000
OLONG_005656 Oryza longistaminata OLONG_005656 I 0.000
OMERI05G15750 Oryza meridionalis OMERI05G15750 I 0.000
ONIVA05G19180 Oryza nivara ONIVA05G19180 I 0.000
orange1.1g018357m.g Citrus sinensis orange1.1g018357m.g I 0.000
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I 0.000
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I 0.000
OS05G0443900 Oryza sativa OS05G0443900 I 0.000
PAN Arabidopsis lyrata fgenesh2_kg.2__1120__AT1G68640.1 I 0.000
Pavir.Hb01807 Panicum virgatum Pavir.Hb01807 I 0.000
PDK_20s1405291g002 Phoenix dactylifera PDK_20s1405291g002 I 0.000
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I 0.000
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.000
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I 0.000
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.000
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I 0.000
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I 0.000
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I 0.000
TGA10 Arabidopsis thaliana AT5G06839 D 0.000
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I 0.000
Traes_1AL_3B659AABA Triticum aestivum Traes_1AL_3B659AABA I 0.000
Traes_1DS_0CFC1995D Triticum aestivum Traes_1DS_0CFC1995D I 0.000
Traes_6AS_9916DDE4D Triticum aestivum Traes_6AS_9916DDE4D I 0.000
Traes_6BS_65CDD608F Triticum aestivum Traes_6BS_65CDD608F I 0.000
Traes_6DS_FD90D1145 Triticum aestivum Traes_6DS_FD90D1145 I 0.000