CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSAMXG00000004952
(
Astyanax mexicanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSAMXG00000004952
T087119_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM1
M02874_2.00
Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN
SELEX
Jolma et al.(2013)
PRDM1_1
0.784
0.939
PRDM1
M02731_2.00
Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR
SELEX
Jolma et al.(2010)
PRDM1_dimer
0.784
0.939
PRDM1
M04396_2.00
Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN
SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX
0.784
0.939
PRDM1
M08083_2.00
Homo sapiens
NHACTTTCHY
RDGAAAGTDN
ChIP-seq
Mathelier et al.(2014)
MA0508.2
0.784
0.939
PRDM1
M07845_2.00
Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford
0.784
0.939
PRDM1
M08191_2.00
Homo sapiens
ACTTTCAC
GTGAAAGT
ChIP-seq
Contrino et al.(2012)
Mv110
0.784
0.939
PRDM1
M08192_2.00
Homo sapiens
HRTCACTTT
AAAGTGAYD
ChIP-seq
Contrino et al.(2012)
Mv112
0.784
0.939
PRDM1
M08276_2.00
Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD
ChIP-seq
Schmitges et al.(2016)
O75626.MEME
0.784
0.939
PRDM1
M08854_2.00
Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A
0.784
0.939
PRDM1
M09500_2.00
Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT
Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477
0.784
0.939
PRDM1
M10108_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q4
0.784
0.939
PRDM1
M10109_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01
0.784
0.939
PRDM1
M10110_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BLIMP1_Q6
0.784
0.939
PRDM1
M10111_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM1_03
0.784
0.939
PRDM1
M04397_2.00
Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN
SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX
0.784
0.939
Prdm1
M08995_2.00
Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN
Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A
0.784
0.930
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAMXP00000005078
C2H2 ZF
511
533
YECNVCSKTFGQLSNLKVHLRVH
ENSAMXP00000005078
C2H2 ZF
539
561
FKCQTCNKGFTQLAHLQKHYLVH
ENSAMXP00000005078
C2H2 ZF
567
589
HECQVCHKRFSSTSNLKTHLRLH
ENSAMXP00000005078
C2H2 ZF
595
617
YQCKLCPAKFTQFVHLKLHKRLH
ENSAMXP00000005078
C2H2 ZF
623
644
HKCPHCHRNYIHLCSLRLHLKG
Links
Other
C2H2 ZF
family TFs
Other
Astyanax mexicanus
TFs
43 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG005405.1
Alligator sinensis
Alligator_sinensis_CCG005405.1
I
Cmyd_10004697
Chelonia mydas
Cmyd_10004697
I
ENSAMEG00000012221
Ailuropoda melanoleuca
ENSAMEG00000012221
I
ENSBTAG00000016502
Bos taurus
ENSBTAG00000016502
I
ENSBTAG00000046481
Bos taurus
ENSBTAG00000046481
I
ENSBTAP00000021935-D1
Bos grunniens
ENSBTAP00000021935-D1
I
ENSBTAP00000048192-D3
Bos grunniens
ENSBTAP00000048192-D3
I
ENSCPOG00000014815
Cavia porcellus
ENSCPOG00000014815
I
ENSCSAG00000005533
Chlorocebus sabaeus
ENSCSAG00000005533
I
ENSDORG00000002972
Dipodomys ordii
ENSDORG00000002972
I
ENSFALG00000004356
Ficedula albicollis
ENSFALG00000004356
I
ENSGALG00000026752
Gallus gallus
ENSGALG00000026752
I
ENSMEUG00000003745
Macropus eugenii
ENSMEUG00000003745
I
ENSMMUP00000006945
Macaca fascicularis
ENSMMUP00000006945
I
ENSNLEG00000017717
Nomascus leucogenys
ENSNLEG00000017717
I
ENSPANG00000018242
Papio anubis
ENSPANG00000018242
I
ENSPPYG00000004570
Pongo abelii
ENSPPYG00000004570
I
ENSPSIG00000003019
Pelodiscus sinensis
ENSPSIG00000003019
I
ENSSHAG00000000623
Sarcophilus harrisii
ENSSHAG00000000623
I
ENSSSCG00000000256
Sus scrofa
ENSSSCG00000000256
I
ENSSTOG00000011188
Ictidomys tridecemlineatus
ENSSTOG00000011188
I
ENSTSYG00000010942
Tarsius syrichta
ENSTSYG00000010942
I
Gfo_R004393
Geospiza fortis
Gfo_R004393
I
Myotis_brandtii_ZNF740_10023006
Myotis brandtii
Myotis_brandtii_ZNF740_10023006
I
Zfp740
Mus musculus
ENSMUSG00000046897
D
ZNF740
Echinops telfairi
ENSETEG00000006127
I
ZNF740
Tupaia belangeri
ENSTBEG00000015437
I
ZNF740
Tursiops truncatus
ENSTTRG00000002776
I
ZNF740
Gorilla gorilla
ENSGGOG00000006790
I
ZNF740
Equus caballus
ENSECAG00000013071
I
ZNF740
Dasypus novemcinctus
ENSDNOG00000033888
I
ZNF740
Callithrix jacchus
ENSCJAG00000018381
I
ZNF740
Canis familiaris
ENSCAFG00000007070
I
znf740
Xenopus tropicalis
XB-GENE-1219010
I
Znf740
Rattus norvegicus
ENSRNOG00000012192
I
ZNF740
Pan troglodytes
ENSPTRG00000005005
I
ZNF740
Otolemur garnettii
ENSOGAG00000025330
I
ZNF740
Oryctolagus cuniculus
ENSOCUG00000001422
I
ZNF740
Anolis carolinensis
ENSACAG00000006993
I
ZNF740
Macaca mulatta
ENSMMUG00000005246
I
ZNF740
Myotis lucifugus
ENSMLUG00000017275
I
ZNF740
Microcebus murinus
ENSMICG00000014191
I
ZNF740
Felis catus
ENSFCAG00000005868
I
ZNF740
Loxodonta africana
ENSLAFG00000009191
I
ZNF740
Homo sapiens
ENSG00000139651
D
znf740.S
Xenopus laevis
XB-GENE-1219015
I