ZKSCAN1 (Choloepus hoffmanni)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCHOG00000008882 T088929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZKSCAN1
M05847_2.00 		Homo sapiens
NNNCCTACTAHGH
DCDTAGTAGGNNN		 SMiLE-seq
Isakova et al.(2017)
ZKSCAN1 		0.827 1.000
ZKSCAN1
M08874_2.00 		Homo sapiens
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH		 Misc
Kulakovskiy et al.(2013)
ZKSC1_HUMAN.H11MO.0.B 		0.827 1.000
Zkscan1
M00771_2.00 		Mus musculus
NNNHDHDNNN
NNNHDHDNNN		 PBM
Weirauch et al.(2013)
pTH2280 		0.825 0.993
Zkscan1
M08985_2.00 		Mus musculus
DVHDBNCCTACTRTGTGCH
DGCACAYAGTAGGNVHDBH		 Misc
Kulakovskiy et al.(2013)
ZKSC1_MOUSE.H11MO.0.A 		0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000007855 C2H2 ZF 378 400
ENSCHOP00000007855 C2H2 ZF 406 428
ENSCHOP00000007855 C2H2 ZF 434 456
ENSCHOP00000007855 C2H2 ZF 462 484
ENSCHOP00000007855 C2H2 ZF 490 512
ENSCHOP00000007855 C2H2 ZF 518 540

Links

Other C2H2 ZF family TFs
Other Choloepus hoffmanni TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALNC14_059010 Albugo laibachii ALNC14_059010 N
estExt_fgenesh1_pg.C_80097 Phytophthora capsici estExt_fgenesh1_pg.C_80097 N
F443_18208 Phytophthora parasitica F443_18208 N
fgenesh_scip_prom.28083.8498 Phytophthora lateralis fgenesh_scip_prom.28083.8498 N
HpaG808188 Hyaloperonospora arabidopsidis HpaG808188 N
maker-pir_contig_380-snap-gene-0.13 Pythium irregulare maker-pir_contig_380-snap-gene-0.13 N
maker-piw_contig_292-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_292-fgenesh-gene-0.2 N
maker-pve_contig_274-fgenesh-gene-0.2 Pythium vexans maker-pve_contig_274-fgenesh-gene-0.2 N
Physo140584 Phytophthora sojae Physo140584 N
PITG_13032 Phytophthora infestans PITG_13032 N
PYU1_G000358 Pythium ultimum PYU1_G000358 N
snap_masked-par_contig_136-abinit-gene-0.22 Pythium arrhenomanes snap_masked-par_contig_136-abinit-gene-0.22 N
SPRG_02234 Saprolegnia parasitica SPRG_02234 N