macho1 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000007968 T089088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.773 0.880
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.773 0.880
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.773 0.880
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.773 0.880
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.773 0.880
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000016294 C2H2 ZF 183 210
ENSCINP00000016294 C2H2 ZF 216 240
ENSCINP00000016294 C2H2 ZF 246 270
ENSCINP00000016294 C2H2 ZF 276 300

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGAP001291 Anopheles gambiae AGAP001291 I 0.770
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.778
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.774
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.771
csin109208 Clonorchis sinensis csin109208 I 0.761
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.761
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.769
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.768
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.759
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.815
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.772
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.762
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.772
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.769
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.759
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.759
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.772
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.773
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.773
GB54250 Apis mellifera GB54250 I 0.758
GD19752 Drosophila simulans FBgn0191241 I 0.773
GF18915 Drosophila ananassae FBgn0095929 I 0.773
GG12590 Drosophila erecta FBgn0104878 I 0.773
GH23039 Drosophila grimshawi FBgn0130496 I 0.773
GI10245 Drosophila mojavensis FBgn0133010 I 0.773
GJ11051 Drosophila virilis FBgn0198317 I 0.773
GK13239 Drosophila willistoni FBgn0215248 I 0.773
GL21621 Drosophila persimilis FBgn0159214 I 0.773
GM10780 Drosophila sechellia FBgn0165726 I 0.773
KGM_22387 Danaus plexippus KGM_22387 I 0.773
MDOA000052 Musca domestica MDOA000052 I 0.763
NEMVEDRAFT_v1g121215 Nematostella vectensis NEMVEDRAFT_v1g121215 I 0.774
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.761
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.776
NV11451 Nasonia vitripennis NV11451 I 0.770
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.769
opa Drosophila melanogaster FBgn0003002 D 0.773
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.766
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.766
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.771
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.763
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.770
T265_00048 Opisthorchis viverrini T265_00048 I 0.761
TC010234 Tribolium castaneum TC010234 I 0.773
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.764
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.765
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.774
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.758
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.773
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.772
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.772
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.772
zic6 Danio rerio ENSDARG00000071496 I 0.759