Patz1 (Mus musculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMUSG00000020453 T101014_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.827 1.000
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.827 1.000
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMUSP00000050684 C2H2 ZF 292 314
ENSMUSP00000050684 C2H2 ZF 356 377
ENSMUSP00000050684 C2H2 ZF 383 405
ENSMUSP00000050684 C2H2 ZF 413 436
ENSMUSP00000050684 C2H2 ZF 442 464
ENSMUSP00000091103 C2H2 ZF 292 314
ENSMUSP00000091103 C2H2 ZF 356 377
ENSMUSP00000091103 C2H2 ZF 383 405
ENSMUSP00000091103 C2H2 ZF 413 436
ENSMUSP00000091103 C2H2 ZF 442 464
ENSMUSP00000092043 C2H2 ZF 292 314
ENSMUSP00000092043 C2H2 ZF 356 377
ENSMUSP00000092043 C2H2 ZF 383 405
ENSMUSP00000092043 C2H2 ZF 413 436
ENSMUSP00000105670 C2H2 ZF 292 314
ENSMUSP00000105670 C2H2 ZF 356 377
ENSMUSP00000105670 C2H2 ZF 383 405
ENSMUSP00000105670 C2H2 ZF 413 436
ENSMUSP00000105670 C2H2 ZF 442 464
ENSMUSP00000105670 C2H2 ZF 496 518

Links

Other C2H2 ZF family TFs
Other Mus musculus TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30076.m004464 Ricinus communis 30076.m004464 I 0.000
30171.m000418 Ricinus communis 30171.m000418 I 0.000
Al_scaffold_0006_3886 Arabidopsis lyrata Al_scaffold_0006_3886 I 0.000
AMTR_s00001p00272270 Amborella trichopoda AMTR_s00001p00272270 I 0.000
AMTR_s00044p00072910 Amborella trichopoda AMTR_s00044p00072910 I 0.000
Aquca_002_01329 Aquilegia coerulea Aquca_002_01329 I 0.000
Aquca_013_00001 Aquilegia coerulea Aquca_013_00001 I 0.000
BGIOSGA018757 Oryza indica BGIOSGA018757 I 0.000
BGIOSGA028019 Oryza indica BGIOSGA028019 I 0.000
Bo2g013560 Brassica oleracea Bo2g013560 I 0.000
Bo3g001090 Brassica oleracea Bo3g001090 I 0.000
Bo4g006930 Brassica oleracea Bo4g006930 I 0.000
Bo5g002760 Brassica oleracea Bo5g002760 I 0.000
Bo9g003580 Brassica oleracea Bo9g003580 I 0.000
Bostr.10064s0009 Boechera stricta Bostr.10064s0009 I 0.000
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I 0.000
Bostr.5325s0026 Boechera stricta Bostr.5325s0026 I 0.000
Bra004503 Brassica rapa Bra004503 I 0.000
Bra006394 Brassica rapa Bra006394 I 0.000
Bra023610 Brassica rapa Bra023610 I 0.000
Bra030496 Brassica rapa Bra030496 I 0.000
Bra033291 Brassica rapa Bra033291 I 0.000
Bra037365 Brassica rapa Bra037365 I 0.000
BRADI1G29680 Brachypodium distachyon BRADI1G29680 I 0.000
BRADI3G16515 Brachypodium distachyon BRADI3G16515 I 0.000
BRADI3G51960 Brachypodium distachyon BRADI3G51960 I 0.000
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I 0.000
Cagra.1968s0051 Capsella grandiflora Cagra.1968s0051 I 0.000
Cagra.4849s0004 Capsella grandiflora Cagra.4849s0004 I 0.000
Cagra.6594s0025 Capsella grandiflora Cagra.6594s0025 I 0.000
Carubv10001147m.g Capsella rubella Carubv10001147m.g I 0.000
Carubv10001399m.g Capsella rubella Carubv10001399m.g I 0.000
Carubv10008551m.g Capsella rubella Carubv10008551m.g I 0.000
Carubv10022831m.g Capsella rubella Carubv10022831m.g I 0.000
cassava33517.m1 Manihot esculenta cassava33517.m1 I 0.000
cassava35529.valid.m1 Manihot esculenta cassava35529.valid.m1 I 0.000
cassava35530.valid.m1 Manihot esculenta cassava35530.valid.m1 I 0.000
cassava35531.valid.m1 Manihot esculenta cassava35531.valid.m1 I 0.000
cassava36126.valid.m1 Manihot esculenta cassava36126.valid.m1 I 0.000
Ca_14385 Cicer arietinum Ca_14385 I 0.000
CCA1 Arabidopsis thaliana AT2G46830 D 0.000
CCA1 Arabidopsis lyrata scaffold_403655.1 I 0.000
CHLREDRAFT_112628 Chlamydomonas reinhardtii CHLREDRAFT_112628 I 0.000
CHLREDRAFT_123164 Chlamydomonas reinhardtii CHLREDRAFT_123164 I 0.000
chr3.CM0208.410.nd Lotus japonicus chr3.CM0208.410.nd I 0.000
Ciclev10011554m.g Citrus clementina Ciclev10011554m.g I 0.000
Ciclev10018964m.g Citrus clementina Ciclev10018964m.g I 0.000
Cla009284 Citrullus lanatus Cla009284 I 0.000
Cla018914 Citrullus lanatus Cla018914 I 0.000
Cucsa.112530 Cucumis sativus Cucsa.112530 I 0.000
Cucsa.278220 Cucumis sativus Cucsa.278220 I 0.000
Cucsa.349800 Cucumis sativus Cucsa.349800 I 0.000
estExt_fgenesh1_pg.C_190109 Bigelowiella natans estExt_fgenesh1_pg.C_190109 I 0.000
estExt_fgenesh2_pg.C_Chr_080053 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_080053 I 0.000
Eucgr.D02651 Eucalyptus grandis Eucgr.D02651 I 0.000
Eucgr.F02906 Eucalyptus grandis Eucgr.F02906 I 0.000
Eucgr.K02302 Eucalyptus grandis Eucgr.K02302 I 0.000
EuGene.0000110367 Micromonas pusilla EuGene.0000110367 I 0.000
EuGene.0400010070 Ostreococcus RCC809 EuGene.0400010070 I 0.000
evm.TU.supercontig_1055.1 Carica papaya evm.TU.supercontig_1055.1 I 0.000
evm.TU.supercontig_178.22 Carica papaya evm.TU.supercontig_178.22 I 0.000
evm.TU.supercontig_7.134 Carica papaya evm.TU.supercontig_7.134 I 0.000
e_gw1.04.00.501.1 Ostreococcus tauri e_gw1.04.00.501.1 N 0.000
F775_18043 Aegilops tauschii F775_18043 I 0.000
F775_22242 Aegilops tauschii F775_22242 I 0.000
F775_22448 Aegilops tauschii F775_22448 I 0.000
F775_26024 Aegilops tauschii F775_26024 I 0.000
fgenesh2_kg.1__2004__AT1G18330.2 Arabidopsis lyrata fgenesh2_kg.1__2004__AT1G18330.2 I 0.000
GLYMA02G40800 Glycine max GLYMA02G40800 I 0.000
GLYMA03G42260 Glycine max GLYMA03G42260 I 0.000
GLYMA07G05410 Glycine max GLYMA07G05410 I 0.000
GLYMA11G33180 Glycine max GLYMA11G33180 I 0.000
GLYMA14G39130 Glycine max GLYMA14G39130 I 0.000
GLYMA16G01980 Glycine max GLYMA16G01980 I 0.000
GLYMA18G05050 Glycine max GLYMA18G05050 I 0.000
GLYMA19G45030 Glycine max GLYMA19G45030 I 0.000
Gorai.001G069700 Gossypium raimondii Gorai.001G069700 I 0.000
Gorai.007G113900 Gossypium raimondii Gorai.007G113900 I 0.000
Gorai.008G131800 Gossypium raimondii Gorai.008G131800 I 0.000
Gorai.008G132000 Gossypium raimondii Gorai.008G132000 I 0.000
GRMZM2G014902 Zea mays GRMZM2G014902 I 0.000
GRMZM2G115070 Zea mays GRMZM2G115070 I 0.000
GRMZM2G170322 Zea mays GRMZM2G170322 I 0.000
GRMZM2G175265 Zea mays GRMZM2G175265 I 0.000
GRMZM2G415077 Zea mays GRMZM2G415077 N 0.000
GSMUA_Achr10G06560_001 Musa acuminata GSMUA_Achr10G06560_001 I 0.000
GSMUA_Achr1G06360_001 Musa acuminata GSMUA_Achr1G06360_001 I 0.000
GSMUA_AchrUn_randomG02340_001 Musa acuminata GSMUA_AchrUn_randomG02340_001 I 0.000
GSMUA_AchrUn_randomG03000_001 Musa acuminata GSMUA_AchrUn_randomG03000_001 I 0.000
gw1.325.30.1 Physcomitrella patens gw1.325.30.1 I 0.000
gw1.8.161.1 Volvox carteri gw1.8.161.1 I 0.000
gw1.9.308.1 Chlorella NC64A gw1.9.308.1 I 0.000
LHY Arabidopsis thaliana AT1G01060 D 0.000
LHY Arabidopsis lyrata fgenesh2_kg.1__131__AT1G01060.3 I 0.000
LPERR02G22990 Leersia perrieri LPERR02G22990 I 0.000
LPERR05G03900 Leersia perrieri LPERR05G03900 I 0.000
LPERR08G03480 Leersia perrieri LPERR08G03480 I 0.000
Lus10005134.g Linum usitatissimum Lus10005134.g I 0.000
Lus10010100.g Linum usitatissimum Lus10010100.g I 0.000
Lus10030184.g Linum usitatissimum Lus10030184.g I 0.000
MDP0000193097 Malus domestica MDP0000193097 I 0.000
mgf011909m Mimulus guttatus mgf011909m I 0.000
mgf014004m Mimulus guttatus mgf014004m I 0.000
mgf021826m Mimulus guttatus mgf021826m I 0.000
MLOC_14118 Hordeum vulgare MLOC_14118 I 0.000
MLOC_5590 Hordeum vulgare MLOC_5590 I 0.000
MLOC_59912 Hordeum vulgare MLOC_59912 I 0.000
MTR_7g118330 Medicago truncatula MTR_7g118330 I 0.000
OB02G35470 Oryza brachyantha OB02G35470 I 0.000
OB05G14050 Oryza brachyantha OB05G14050 I 0.000
OB06G35920 Oryza brachyantha OB06G35920 I 0.000
OB08G13700 Oryza brachyantha OB08G13700 I 0.000
OBART05G04360 Oryza barthii OBART05G04360 I 0.000
OBART05G04370 Oryza barthii OBART05G04370 I 0.000
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I 0.000
OGLUM08G03510 Oryza glumaepatula OGLUM08G03510 I 0.000
OLONG_000103 Oryza longistaminata OLONG_000103 I 0.000
OMERI05G04320 Oryza meridionalis OMERI05G04320 I 0.000
OMERI08G03470 Oryza meridionalis OMERI08G03470 I 0.000
ONIVA05G04710 Oryza nivara ONIVA05G04710 I 0.000
ONIVA08G03410 Oryza nivara ONIVA08G03410 I 0.000
OPUNC02G25920 Oryza punctata OPUNC02G25920 I 0.000
OPUNC08G03280 Oryza punctata OPUNC08G03280 I 0.000
orange1.1g004262m.g Citrus sinensis orange1.1g004262m.g I 0.000
orange1.1g012625m.g Citrus sinensis orange1.1g012625m.g I 0.000
ORGLA08G0028700 Oryza glaberrima ORGLA08G0028700 I 0.000
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I 0.000
OS05G0162800 Oryza sativa OS05G0162800 I 0.000
OS08G0157600 Oryza sativa OS08G0157600 D 0.000
OSTLU_6612 Ostreococcus lucimarinus OSTLU_6612 I 0.000
Pavir.Aa00960 Panicum virgatum Pavir.Aa00960 I 0.000
Pavir.Ab02717 Panicum virgatum Pavir.Ab02717 I 0.000
Pavir.Fa01905 Panicum virgatum Pavir.Fa01905 I 0.000
Pavir.J28275 Panicum virgatum Pavir.J28275 N 0.000
Pavir.J34894 Panicum virgatum Pavir.J34894 I 0.000
PDK_20s1414244g001 Phoenix dactylifera PDK_20s1414244g001 I 0.000
PGSC0003DMG400011294 Solanum tuberosum PGSC0003DMG400011294 I 0.000
PGSC0003DMG400021459 Solanum tuberosum PGSC0003DMG400021459 I 0.000
PK20866.1 Cannabis sativa PK20866.1 I 0.000
Pm028731 Prunus mume Pm028731 I 0.000
POPTR_0002s18170 Populus trichocarpa POPTR_0002s18170 I 0.000
POPTR_0004s07270 Populus trichocarpa POPTR_0004s07270 I 0.000
POPTR_0012s03530 Populus trichocarpa POPTR_0012s03530 I 0.000
POPTR_0014s10240 Populus trichocarpa POPTR_0014s10240 I 0.000
POPTR_0015s05430 Populus trichocarpa POPTR_0015s05430 I 0.000
PRUPE_ppa001765mg Prunus persica PRUPE_ppa001765mg I 0.000
PRUPE_ppa005083mg Prunus persica PRUPE_ppa005083mg I 0.000
RVE1 Vitis vinifera VIT_04s0079g00410 I 0.000
RVE5 Arabidopsis thaliana AT4G01280 D 0.000
RVE7 Arabidopsis thaliana AT1G18330 D 0.000
RVE7L Arabidopsis thaliana AT3G10113 D 0.000
SapurV1A.0003s0380 Salix purpurea SapurV1A.0003s0380 I 0.000
SapurV1A.0074s0170 Salix purpurea SapurV1A.0074s0170 I 0.000
SapurV1A.0147s0490 Salix purpurea SapurV1A.0147s0490 I 0.000
SapurV1A.0162s0390 Salix purpurea SapurV1A.0162s0390 I 0.000
SapurV1A.0202s0430 Salix purpurea SapurV1A.0202s0430 I 0.000
SapurV1A.0985s0170 Salix purpurea SapurV1A.0985s0170 I 0.000
Sb01g012460 Sorghum bicolor Sb01g012460 I 0.000
Sb04g031590 Sorghum bicolor Sb04g031590 I 0.000
Sb07g003870 Sorghum bicolor Sb07g003870 I 0.000
Si002704m.g Setaria italica Si002704m.g I 0.000
Si014685m.g Setaria italica Si014685m.g I 0.000
Si017289m.g Setaria italica Si017289m.g I 0.000
Si038786m.g Setaria italica Si038786m.g I 0.000
Solyc02g036370.2 Solanum lycopersicum Solyc02g036370.2 I 0.000
Solyc10g005080.2 Solanum lycopersicum Solyc10g005080.2 I 0.000
TCM_005021 Theobroma cacao TCM_005021 I 0.000
Thhalv10007028m.g Eutrema salsugineum Thhalv10007028m.g I 0.000
Thhalv10013821m.g Eutrema salsugineum Thhalv10013821m.g I 0.000
Thhalv10028806m.g Eutrema salsugineum Thhalv10028806m.g I 0.000
Traes_1BS_24DBD38A8 Triticum aestivum Traes_1BS_24DBD38A8 I 0.000
Traes_6BL_2F2381640 Triticum aestivum Traes_6BL_2F2381640 I 0.000
Traes_7AL_19F222799 Triticum aestivum Traes_7AL_19F222799 I 0.000
Traes_7BL_998EC9F74 Triticum aestivum Traes_7BL_998EC9F74 I 0.000
Traes_7DL_310E46F15 Triticum aestivum Traes_7DL_310E46F15 I 0.000
TRIUR3_06252 Triticum urartu TRIUR3_06252 I 0.000
TRIUR3_13396 Triticum urartu TRIUR3_13396 I 0.000
TRIUR3_24634 Triticum urartu TRIUR3_24634 I 0.000
VIT_15s0048g02410 Vitis vinifera VIT_15s0048g02410 I 0.000