CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J28275
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.J28275
T289440_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J28275.1.p
Myb
54
99
REPWSAEEHGRFLDALLMFGRDWKKIEEHVRTKTTVQIRSHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J37379
Panicum virgatum
Pavir.J37379
N
0.868
Si002704m.g
Setaria italica
Si002704m.g
I
0.862
LPERR01G03340
Leersia perrieri
LPERR01G03340
I
0.785
e_gw1.04.00.501.1
Ostreococcus tauri
e_gw1.04.00.501.1
N
0.779
Sb03g005480
Sorghum bicolor
Sb03g005480
I
0.757
BGIOSGA002364
Oryza indica
BGIOSGA002364
I
0.745
OBART01G03720
Oryza barthii
OBART01G03720
I
0.745
OGLUM01G03980
Oryza glumaepatula
OGLUM01G03980
I
0.745
OMERI01G03530
Oryza meridionalis
OMERI01G03530
I
0.745
ONIVA01G04110
Oryza nivara
ONIVA01G04110
I
0.745
OPUNC01G03310
Oryza punctata
OPUNC01G03310
I
0.745
ORGLA01G0032300
Oryza glaberrima
ORGLA01G0032300
I
0.745
ORUFI01G03800
Oryza rufipogon
ORUFI01G03800
I
0.745
OS01G0156000
Oryza sativa
OS01G0156000
I
0.745
BRADI1G34840
Brachypodium distachyon
BRADI1G34840
I
0.744
MLOC_59912
Hordeum vulgare
MLOC_59912
I
0.719
F775_22242
Aegilops tauschii
F775_22242
I
0.706
TRIUR3_06252
Triticum urartu
TRIUR3_06252
I
0.706
Ciclev10020130m.g
Citrus clementina
Ciclev10020130m.g
I
0.704
orange1.1g021851m.g
Citrus sinensis
orange1.1g021851m.g
I
0.704
GRMZM2G029850
Zea mays
GRMZM2G029850
I
0.684
Genemark1.422_g
Coccomyxa subellipsoidea C169
Genemark1.422_g
I
0.683
fgeneshCV_pg.C_scaffold_1000277
Chlorella vulgaris
fgeneshCV_pg.C_scaffold_1000277
I
0.683
BRADI2G34670
Brachypodium distachyon
BRADI2G34670
I
0.680
LPERR05G03900
Leersia perrieri
LPERR05G03900
I
0.665