SNAI1 (Pteropus vampyrus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPVAG00000004119 T108518_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.819 0.945
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.819 0.945
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.819 0.945
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.819 0.945
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.819 0.945
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.819 0.945
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.819 0.945
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.819 0.945
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.816 0.923
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.816 0.923
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000003898 C2H2 ZF 156 178
ENSPVAP00000003898 C2H2 ZF 182 204
ENSPVAP00000003898 C2H2 ZF 210 232
ENSPVAP00000003898 C2H2 ZF 238 259

Links

Other C2H2 ZF family TFs
Other Pteropus vampyrus TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00009p00241540 Amborella trichopoda AMTR_s00009p00241540 N
Bo3g103450 Brassica oleracea Bo3g103450 N
Bostr.0568s0468 Boechera stricta Bostr.0568s0468 N
Bra038629 Brassica rapa Bra038629 N
Cagra.0248s0020 Capsella grandiflora Cagra.0248s0020 N
Carubv10027519m.g Capsella rubella Carubv10027519m.g N
Ciclev10018763m.g Citrus clementina Ciclev10018763m.g N
emb2746 Arabidopsis thaliana AT5G63420 N
gene06358-v1.0-hybrid Fragaria vesca gene06358-v1.0-hybrid N
gene06360-v1.0-hybrid Fragaria vesca gene06360-v1.0-hybrid N
GLYMA06G17980 Glycine max GLYMA06G17980 N
GLYMA17G13780 Glycine max GLYMA17G13780 N
Gorai.001G059600 Gossypium raimondii Gorai.001G059600 N
LPERR02G15710 Leersia perrieri LPERR02G15710 N
Lus10016758.g Linum usitatissimum Lus10016758.g N
MDP0000313526 Malus domestica MDP0000313526 N
MDP0000574910 Malus domestica MDP0000574910 N
mgf010338m Mimulus guttatus mgf010338m N
orange1.1g016319m.g Citrus sinensis orange1.1g016319m.g N
orange1.1g040954m.g Citrus sinensis orange1.1g040954m.g N
Pm024489 Prunus mume Pm024489 N
POPTR_0012s09780 Populus trichocarpa POPTR_0012s09780 N
PRUPE_ppa001238mg Prunus persica PRUPE_ppa001238mg N
SapurV1A.0168s0020 Salix purpurea SapurV1A.0168s0020 N
SapurV1A.0841s0060 Salix purpurea SapurV1A.0841s0060 N
Thhalv10003624m.g Eutrema salsugineum Thhalv10003624m.g N