NEMVEDRAFT_v1g121215 (Nematostella vectensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 NEMVEDRAFT_v1g121215 T124165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
opa
M03668_2.00 		Drosophila melanogaster
BVCCCCCCRYNGHB
VDCNRYGGGGGGBV		 SELEX
Nitta et al.(2015)
opa_1 		0.768 0.870
opa
M05861_2.00 		Drosophila melanogaster
VCCCCCCRYNGNK
MNCNRYGGGGGGB		 SMiLE-seq
Isakova et al.(2017)
Opa 		0.768 0.870
opa
M06468_2.00 		Drosophila melanogaster
GMCCCCCCGCDG
CHGCGGGGGGKC		 B1H
Mathelier et al.(2014)
MA0456.1 		0.768 0.870
opa
M06062_2.00 		Drosophila melanogaster
GMCCCCCCRCDG
CHGYGGGGGGKC		 B1H
Zhu et al.(2011)
opa_NAR_FBgn0003002 		0.768 0.870
opa
M06063_2.00 		Drosophila melanogaster
MKVMMCCCCMCYR
YRGKGGGGKKBMK		 B1H
Zhu et al.(2011)
Opa_SANGER_5_FBgn0003002 		0.768 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO35944 C2H2 ZF 70 97
EDO35944 C2H2 ZF 103 127
EDO35944 C2H2 ZF 133 157
EDO35944 C2H2 ZF 163 187

Links

Other C2H2 ZF family TFs
Other Nematostella vectensis TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGAP001291 Anopheles gambiae AGAP001291 I 0.000
CGI_10016115 Crassostrea gigas CGI_10016115 I 0.761
CGI_10016117 Crassostrea gigas CGI_10016117 I 0.762
Cmyd_10016551 Chelonia mydas Cmyd_10016551 I 0.783
csin109208 Clonorchis sinensis csin109208 I 0.757
DAPPUDRAFT_290567 Daphnia pulex DAPPUDRAFT_290567 I 0.756
ENSACAG00000003701 Anolis carolinensis ENSACAG00000003701 I 0.780
ENSAMXG00000000658 Astyanax mexicanus ENSAMXG00000000658 I 0.779
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I 0.775
ENSCSAVG00000001907 Ciona savignyi ENSCSAVG00000001907 I 0.774
ENSDORG00000012706 Dipodomys ordii ENSDORG00000012706 I 0.783
ENSGMOG00000004419 Gadus morhua ENSGMOG00000004419 I 0.778
ENSMMUP00000019456 Macaca fascicularis ENSMMUP00000019456 I 0.783
ENSOANG00000012152 Ornithorhynchus anatinus ENSOANG00000012152 I 0.780
ENSONIG00000002719 Oreochromis niloticus ENSONIG00000002719 I 0.775
ENSPFOG00000012980 Poecilia formosa ENSPFOG00000012980 I 0.763
ENSPPYG00000005471 Pongo abelii ENSPPYG00000005471 I 0.783
ENSSHAG00000015025 Sarcophilus harrisii ENSSHAG00000015025 I 0.768
GA10924 Drosophila pseudoobscura FBgn0070980 I 0.768
GB54250 Apis mellifera GB54250 I 0.000
GD19752 Drosophila simulans FBgn0191241 I 0.768
GF18915 Drosophila ananassae FBgn0095929 I 0.768
GG12590 Drosophila erecta FBgn0104878 I 0.768
GH23039 Drosophila grimshawi FBgn0130496 I 0.768
GI10245 Drosophila mojavensis FBgn0133010 I 0.768
GJ11051 Drosophila virilis FBgn0198317 I 0.768
GK13239 Drosophila willistoni FBgn0215248 I 0.768
GL21621 Drosophila persimilis FBgn0159214 I 0.768
GM10780 Drosophila sechellia FBgn0165726 I 0.768
KGM_22387 Danaus plexippus KGM_22387 I 0.756
MDOA000052 Musca domestica MDOA000052 I 0.771
NEMVEDRAFT_v1g25267 Nematostella vectensis NEMVEDRAFT_v1g25267 I 0.790
nRc.2.0.1.g22468 Romanomermis culicivorax nRc.2.0.1.g22468 I 0.759
NV11451 Nasonia vitripennis NV11451 I 0.000
Ogr17257 Ophisaurus gracilis Ogr17257 I 0.780
opa Drosophila melanogaster FBgn0003002 D 0.768
Pvit_01334 Pogona vitticeps Pvit_01334 I 0.773
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I 0.761
SMU15031708 Schmidtea mediterranea SMU15031708 I 0.000
SMU15033928 Schmidtea mediterranea SMU15033928 I 0.000
SNAPOd2T00002718001 Oikopleura dioica SNAPOd2T00002718001 I 0.000
T265_00048 Opisthorchis viverrini T265_00048 I 0.757
TC010234 Tribolium castaneum TC010234 I 0.756
tetur11g00650 Tetranychus urticae tetur11g00650 I 0.771
TMUE_s0101002100 Trichuris muris TMUE_s0101002100 I 0.765
XP_002153782.1 Hydra magnipapillata XP_002153782.1 I 0.791
XP_002159358.1 Hydra magnipapillata XP_002159358.1 I 0.765
ZIC1 Monodelphis domestica ENSMODG00000021251 I 0.756
ZIC5 Oryctolagus cuniculus ENSOCUG00000026498 I 0.783
ZIC5 Ochotona princeps ENSOPRG00000007526 I 0.783
ZIC5 Sus scrofa ENSSSCG00000009521 I 0.783
zic6 Danio rerio ENSDARG00000071496 I 0.775