POPTR_0003s20400 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0003s20400 T126799_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s20400.1 C2H2 ZF 257 278
POPTR_0003s20400.1 C2H2 ZF 277 306

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29804.m001495 Ricinus communis 29804.m001495 I 0.000
AMTR_s00077p00070990 Amborella trichopoda AMTR_s00077p00070990 I 0.000
Aquca_004_00525 Aquilegia coerulea Aquca_004_00525 I 0.000
Aquca_045_00222 Aquilegia coerulea Aquca_045_00222 I 0.000
AtbZIP52 Arabidopsis lyrata Al_scaffold_0001_623 I 0.000
AtbZIP52 Vitis vinifera VIT_06s0004g08070 I 0.000
AtbZIP52 Arabidopsis thaliana AT1G06850 D 0.000
BGIOSGA012577 Oryza indica BGIOSGA012577 I 0.000
BGIOSGA023710 Oryza indica BGIOSGA023710 I 0.000
Bo8g007220 Brassica oleracea Bo8g007220 I 0.000
Bo8g114410 Brassica oleracea Bo8g114410 I 0.000
Bostr.25219s0275 Boechera stricta Bostr.25219s0275 I 0.000
Bra030663 Brassica rapa Bra030663 I 0.000
Bra031541 Brassica rapa Bra031541 I 0.000
Cagra.1671s0308 Capsella grandiflora Cagra.1671s0308 I 0.000
Carubv10009673m.g Capsella rubella Carubv10009673m.g I 0.000
Ca_08929 Cicer arietinum Ca_08929 I 0.000
Ca_15657 Cicer arietinum Ca_15657 I 0.000
Ciclev10032076m.g Citrus clementina Ciclev10032076m.g I 0.000
Cla007409 Citrullus lanatus Cla007409 I 0.000
Cla013626 Citrullus lanatus Cla013626 I 0.000
Cucsa.118900 Cucumis sativus Cucsa.118900 I 0.000
Cucsa.143950 Cucumis sativus Cucsa.143950 I 0.000
Eucgr.G03135 Eucalyptus grandis Eucgr.G03135 I 0.000
Eucgr.J00119 Eucalyptus grandis Eucgr.J00119 I 0.000
evm.TU.supercontig_2.298 Carica papaya evm.TU.supercontig_2.298 I 0.000
gene21344-v1.0-hybrid Fragaria vesca gene21344-v1.0-hybrid I 0.000
gene28103-v1.0-hybrid Fragaria vesca gene28103-v1.0-hybrid I 0.000
GLYMA02G40270 Glycine max GLYMA02G40270 I 0.000
GLYMA11G30940 Glycine max GLYMA11G30940 I 0.000
GLYMA14G38460 Glycine max GLYMA14G38460 I 0.000
GLYMA18G05880 Glycine max GLYMA18G05880 I 0.000
GRMZM2G151295 Zea mays GRMZM2G151295 I 0.000
GSMUA_Achr2G18830_001 Musa acuminata GSMUA_Achr2G18830_001 I 0.000
LPERR03G14390 Leersia perrieri LPERR03G14390 I 0.000
LPERR07G23230 Leersia perrieri LPERR07G23230 I 0.000
Lus10008605.g Linum usitatissimum Lus10008605.g I 0.000
Lus10009907.g Linum usitatissimum Lus10009907.g I 0.000
Lus10042211.g Linum usitatissimum Lus10042211.g I 0.000
MDP0000129203 Malus domestica MDP0000129203 I 0.000
MDP0000210251 Malus domestica MDP0000210251 I 0.000
MDP0000247372 Malus domestica MDP0000247372 I 0.000
MLOC_44311 Hordeum vulgare MLOC_44311 I 0.000
MTR_3g467120 Medicago truncatula MTR_3g467120 I 0.000
MTR_5g075390 Medicago truncatula MTR_5g075390 I 0.000
OB03G26210 Oryza brachyantha OB03G26210 I 0.000
OB07G31840 Oryza brachyantha OB07G31840 I 0.000
OBART03G16510 Oryza barthii OBART03G16510 I 0.000
OBART07G26390 Oryza barthii OBART07G26390 I 0.000
OGLUM07G26420 Oryza glumaepatula OGLUM07G26420 I 0.000
OLONG_008214 Oryza longistaminata OLONG_008214 I 0.000
OLONG_019327 Oryza longistaminata OLONG_019327 I 0.000
OMERI03G14760 Oryza meridionalis OMERI03G14760 I 0.000
ONIVA03G17500 Oryza nivara ONIVA03G17500 I 0.000
ONIVA07G26100 Oryza nivara ONIVA07G26100 I 0.000
OPUNC03G15960 Oryza punctata OPUNC03G15960 I 0.000
OPUNC07G24840 Oryza punctata OPUNC07G24840 I 0.000
orange1.1g020026m.g Citrus sinensis orange1.1g020026m.g I 0.000
ORGLA03G0157900 Oryza glaberrima ORGLA03G0157900 I 0.000
ORGLA07G0207300 Oryza glaberrima ORGLA07G0207300 I 0.000
ORUFI03G17050 Oryza rufipogon ORUFI03G17050 I 0.000
Pavir.Ib01574 Panicum virgatum Pavir.Ib01574 I 0.000
Pavir.J07252 Panicum virgatum Pavir.J07252 I 0.000
PGSC0003DMG400016651 Solanum tuberosum PGSC0003DMG400016651 I 0.000
PGSC0003DMG400027599 Solanum tuberosum PGSC0003DMG400027599 I 0.000
PK00315.1 Cannabis sativa PK00315.1 D 0.000
PK16335.1 Cannabis sativa PK16335.1 D 0.000
Pm000251 Prunus mume Pm000251 I 0.000
Pm019060 Prunus mume Pm019060 I 0.000
POPTR_0013s15280 Populus trichocarpa POPTR_0013s15280 I 0.000
POPTR_0019s15040 Populus trichocarpa POPTR_0019s15040 I 0.000
PRUPE_ppa006097mg Prunus persica PRUPE_ppa006097mg I 0.000
PRUPE_ppa007645mg Prunus persica PRUPE_ppa007645mg I 0.000
RF2B Oryza sativa OS03G0336200 I 0.000
SapurV1A.0215s0230 Salix purpurea SapurV1A.0215s0230 I 0.000
SapurV1A.3480s0020 Salix purpurea SapurV1A.3480s0020 I 0.000
Si036380m.g Setaria italica Si036380m.g I 0.000
Solyc06g048630.2 Solanum lycopersicum Solyc06g048630.2 I 0.000
TCM_042286 Theobroma cacao TCM_042286 I 0.000
Thhalv10008146m.g Eutrema salsugineum Thhalv10008146m.g I 0.000
Traes_2AS_3B7BE6FDC Triticum aestivum Traes_2AS_3B7BE6FDC I 0.000
Traes_2BS_1B0F27580 Triticum aestivum Traes_2BS_1B0F27580 I 0.000
Traes_2DS_93EAEC654 Triticum aestivum Traes_2DS_93EAEC654 I 0.000
VIT_13s0067g02900 Vitis vinifera VIT_13s0067g02900 I 0.000