POPTR_0003s20400 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0003s20400 T126799_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s20400.1 C2H2 ZF 257 278
POPTR_0003s20400.1 C2H2 ZF 277 306

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006417 Ricinus communis 30169.m006417 N 0.827
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.827
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.822
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.821
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.821
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.818
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.818
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.818
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.818
Pm000471 Prunus mume Pm000471 N 0.818
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.818
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.818
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.818
MDP0000403797 Malus domestica MDP0000403797 N 0.818
MDP0000580545 Malus domestica MDP0000580545 N 0.818
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.818
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.817
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.817
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.811
WIP2 Arabidopsis thaliana AT3G57670 N 0.811
Bo4g111000 Brassica oleracea Bo4g111000 N 0.811
Bo6g073120 Brassica oleracea Bo6g073120 N 0.811
Bo8g092070 Brassica oleracea Bo8g092070 N 0.811
Bra003295 Brassica rapa Bra003295 N 0.811
Bra014612 Brassica rapa Bra014612 N 0.811
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.811
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.811
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.811
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.811
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.811
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.811
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.811
TCM_024788 Theobroma cacao TCM_024788 N 0.811
NTT Vitis vinifera VIT_08s0007g08070 N 0.811
Ca_07269 Cicer arietinum Ca_07269 N 0.811
Cla008187 Citrullus lanatus Cla008187 N 0.811
Pm025853 Prunus mume Pm025853 N 0.811
27810.m000651 Ricinus communis 27810.m000651 N 0.811
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.811
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.811
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.811
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.811
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.811
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.811
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.811
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.811
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.811
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.811
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.811
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.811
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.811
MDP0000601705 Malus domestica MDP0000601705 N 0.811
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.811
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.811
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.811
PK03705.1 Cannabis sativa PK03705.1 N 0.811
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.811
Bra007346 Brassica rapa Bra007346 N 0.810
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.808
TCM_040610 Theobroma cacao TCM_040610 N 0.808
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.808
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.808
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.802
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.802
OBART06G20890 Oryza barthii OBART06G20890 N 0.802
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.802
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.802
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.802
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.802
Ca_21713 Cicer arietinum Ca_21713 N 0.802
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.802
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.802
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.797
Cla008675 Citrullus lanatus Cla008675 N 0.794
mgf019910m Mimulus guttatus mgf019910m N 0.794
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.791
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.791
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.791
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.791
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.791
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.788
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.788
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.788
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.788
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.788
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.788
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.788
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.788
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.788
TCM_041441 Theobroma cacao TCM_041441 N 0.788
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.788
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.788
Pm001374 Prunus mume Pm001374 N 0.788
30055.m001542 Ricinus communis 30055.m001542 N 0.788
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.788
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.788
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.788
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.788
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.788
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.788
MDP0000131949 Malus domestica MDP0000131949 N 0.788
MDP0000300013 Malus domestica MDP0000300013 N 0.788
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.788
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.788
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.787
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.787
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.787
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.784
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.782
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.782
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.782
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.782
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.782
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.782
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.782
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.782
TCM_005892 Theobroma cacao TCM_005892 N 0.782
Ca_16482 Cicer arietinum Ca_16482 N 0.782
30061.m000294 Ricinus communis 30061.m000294 N 0.782
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.782
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.782
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.782
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.782
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.781
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.781
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.781
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.781
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.781
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.781
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.781
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.781
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.781
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.781
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.781
OS09G0307400 Oryza sativa OS09G0307400 N 0.781
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.781
Si030360m.g Setaria italica Si030360m.g N 0.781
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.781
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.781
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.781
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.781
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.778
WIP6 Arabidopsis thaliana AT1G13290 N 0.778
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.778
Bo5g015200 Brassica oleracea Bo5g015200 N 0.778
Bra019822 Brassica rapa Bra019822 N 0.778
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.778
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.778
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.778
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.778
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.778
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.778
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.778
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.778
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.778
OB06G28740 Oryza brachyantha OB06G28740 N 0.778
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.778
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.778
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.778
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.778
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.778
OS06G0612300 Oryza sativa OS06G0612300 N 0.778
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.778
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.778
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.778
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.778
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.778
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.778
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.778
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.778
Si006616m.g Setaria italica Si006616m.g N 0.778
TCM_011858 Theobroma cacao TCM_011858 N 0.778
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.778
Ca_08435 Cicer arietinum Ca_08435 N 0.778
Ca_24699 Cicer arietinum Ca_24699 N 0.778
Cla002714 Citrullus lanatus Cla002714 N 0.778
Pm029018 Prunus mume Pm029018 N 0.778
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.778
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.778
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.778
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.778
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.778
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.778
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.778
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.778
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.778
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.778
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.778
MDP0000303483 Malus domestica MDP0000303483 N 0.778
MDP0000899280 Malus domestica MDP0000899280 N 0.778
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.778
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.778
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.778
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.774
MDP0000144266 Malus domestica MDP0000144266 N 0.771
MDP0000142494 Malus domestica MDP0000142494 N 0.769
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.768
TCM_034881 Theobroma cacao TCM_034881 N 0.768
TT1 Vitis vinifera VIT_18s0001g05860 N 0.768
Cla000184 Citrullus lanatus Cla000184 N 0.768
29908.m006047 Ricinus communis 29908.m006047 N 0.768
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.768
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.768
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.768
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.768
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.768
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.767
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.767
MDP0000573922 Malus domestica MDP0000573922 N 0.766
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.764
OBART09G03640 Oryza barthii OBART09G03640 N 0.764
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.764
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.764
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.764
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.764
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.764
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.764
Ca_07051 Cicer arietinum Ca_07051 N 0.764
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.764
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.764
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.764
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.764
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.762
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.758
Cla015481 Citrullus lanatus Cla015481 N 0.758
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.758
mgf022319m Mimulus guttatus mgf022319m N 0.758
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.758
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.758
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.758
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.758
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.758
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.758
PK05257.1 Cannabis sativa PK05257.1 N 0.758