POPTR_0002s09840 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0002s09840 T126790_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s09840.1 C2H2 ZF 136 157
POPTR_0002s09840.1 C2H2 ZF 156 182

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

209 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.818
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.818
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.818
TCM_034881 Theobroma cacao TCM_034881 N 0.818
MDP0000573922 Malus domestica MDP0000573922 N 0.815
TT1 Vitis vinifera VIT_18s0001g05860 N 0.811
29908.m006047 Ricinus communis 29908.m006047 N 0.811
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.811
Cla000184 Citrullus lanatus Cla000184 N 0.811
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.811
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.808
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.808
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.808
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.808
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.808
30061.m000294 Ricinus communis 30061.m000294 N 0.804
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.804
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.803
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.798
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.798
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.798
MDP0000300013 Malus domestica MDP0000300013 N 0.798
MDP0000131949 Malus domestica MDP0000131949 N 0.798
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.798
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.798
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.798
TCM_005892 Theobroma cacao TCM_005892 N 0.798
TCM_041441 Theobroma cacao TCM_041441 N 0.798
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.798
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.798
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.798
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.798
Pm001374 Prunus mume Pm001374 N 0.798
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.798
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.798
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.798
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.798
30055.m001542 Ricinus communis 30055.m001542 N 0.798
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.798
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.798
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.798
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.798
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.798
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.798
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.798
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.798
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.798
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.798
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.798
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.798
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.794
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.794
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.793
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.793
mgf022981m Mimulus guttatus mgf022981m N 0.793
Ca_16482 Cicer arietinum Ca_16482 N 0.793
Bo5g008880 Brassica oleracea Bo5g008880 N 0.792
Bo8g112550 Brassica oleracea Bo8g112550 N 0.792
Bra031621 Brassica rapa Bra031621 N 0.792
Bra018638 Brassica rapa Bra018638 N 0.792
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.792
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.788
Ca_27078 Cicer arietinum Ca_27078 N 0.788
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.788
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.788
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.788
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.788
MDP0000144266 Malus domestica MDP0000144266 N 0.787
MDP0000142494 Malus domestica MDP0000142494 N 0.785
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.783
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.783
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.782
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.782
WIP3 Arabidopsis thaliana AT1G08290 N 0.782
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.782
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.782
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.782
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.782
mgf022319m Mimulus guttatus mgf022319m N 0.780
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.779
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.778
30169.m006417 Ricinus communis 30169.m006417 N 0.778
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.778
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.778
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.778
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.776
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.774
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.774
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.774
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.774
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.774
Ca_07051 Cicer arietinum Ca_07051 N 0.774
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.774
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.774
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.774
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.774
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.774
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.774
Cla015481 Citrullus lanatus Cla015481 N 0.774
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.774
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.773
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.768
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.768
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.768
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.768
MDP0000601705 Malus domestica MDP0000601705 N 0.768
MDP0000580545 Malus domestica MDP0000580545 N 0.768
MDP0000403797 Malus domestica MDP0000403797 N 0.768
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.768
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.768
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.768
PK05257.1 Cannabis sativa PK05257.1 N 0.768
PK03705.1 Cannabis sativa PK03705.1 N 0.768
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.768
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.768
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.768
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.768
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.768
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.768
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.768
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.768
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.768
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.768
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.768
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.768
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.768
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.768
Ca_07269 Cicer arietinum Ca_07269 N 0.768
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.768
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.768
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.768
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.768
Bra014612 Brassica rapa Bra014612 N 0.768
TCM_024788 Theobroma cacao TCM_024788 N 0.768
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.768
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.768
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.768
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.768
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.768
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.768
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.768
Bra003295 Brassica rapa Bra003295 N 0.768
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.768
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.768
WIP2 Arabidopsis thaliana AT3G57670 N 0.768
Pm000471 Prunus mume Pm000471 N 0.768
Bo4g111000 Brassica oleracea Bo4g111000 N 0.768
Cla008187 Citrullus lanatus Cla008187 N 0.768
Pm025853 Prunus mume Pm025853 N 0.768
27810.m000651 Ricinus communis 27810.m000651 N 0.768
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.768
Bo8g092070 Brassica oleracea Bo8g092070 N 0.768
Bo6g073120 Brassica oleracea Bo6g073120 N 0.768
Bo5g081360 Brassica oleracea Bo5g081360 N 0.768
NTT Vitis vinifera VIT_08s0007g08070 N 0.768
Bra007346 Brassica rapa Bra007346 N 0.767
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.767
OBART08G19670 Oryza barthii OBART08G19670 N 0.764
OB08G26650 Oryza brachyantha OB08G26650 N 0.764
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.764
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.764
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.764
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.764
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.764
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.764
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.764
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.764
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.764
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.764
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.764
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.764
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.764
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.764
OS09G0485600 Oryza sativa OS09G0485600 N 0.764
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.764
Si013819m.g Setaria italica Si013819m.g N 0.764
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.764
OS08G0504000 Oryza sativa OS08G0504000 N 0.764
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.764
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.764
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.764
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.764
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.764
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.764
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.759
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.759
Ca_21713 Cicer arietinum Ca_21713 N 0.759
TCM_040610 Theobroma cacao TCM_040610 N 0.759
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.759
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.759
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.759
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.759
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.759
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.759
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.759
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.759
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.759
OBART06G20890 Oryza barthii OBART06G20890 N 0.759
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.758
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.758
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.758
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.758
Si029897m.g Setaria italica Si029897m.g N 0.758
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.758
F775_14972 Aegilops tauschii F775_14972 N 0.758
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.758
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.758
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.758
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.758