Pavir.Fb01879 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Fb01879 T143357_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01879.1.p C2H2 ZF 319 340
Pavir.Fb01879.1.p C2H2 ZF 339 368

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

267 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.827
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.827
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.827
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.827
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.827
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.827
OB08G26650 Oryza brachyantha OB08G26650 N 0.827
OBART08G19670 Oryza barthii OBART08G19670 N 0.827
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.827
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.827
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.827
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.827
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.827
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.827
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.827
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.827
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.827
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.827
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.827
OS08G0504000 Oryza sativa OS08G0504000 N 0.827
OS09G0485600 Oryza sativa OS09G0485600 N 0.827
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.827
Si013819m.g Setaria italica Si013819m.g N 0.827
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.827
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.821
F775_14972 Aegilops tauschii F775_14972 N 0.821
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.821
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.821
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.821
Si029897m.g Setaria italica Si029897m.g N 0.821
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.821
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.821
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.821
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.821
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.821
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.811
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.797
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.793
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.793
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.793
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.793
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.788
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.788
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.788
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.788
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.788
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.788
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.788
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.788
TCM_041441 Theobroma cacao TCM_041441 N 0.788
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.788
Ca_07051 Cicer arietinum Ca_07051 N 0.788
Pm001374 Prunus mume Pm001374 N 0.788
30055.m001542 Ricinus communis 30055.m001542 N 0.788
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.788
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.788
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.788
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.788
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.788
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.788
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.788
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.788
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.788
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.788
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.788
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.788
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.788
MDP0000131949 Malus domestica MDP0000131949 N 0.788
MDP0000300013 Malus domestica MDP0000300013 N 0.788
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.788
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.788
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.787
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.787
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.787
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.787
TCM_005892 Theobroma cacao TCM_005892 N 0.787
Cla015481 Citrullus lanatus Cla015481 N 0.787
30061.m000294 Ricinus communis 30061.m000294 N 0.787
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.787
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.787
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.787
mgf022319m Mimulus guttatus mgf022319m N 0.787
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.787
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.787
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.787
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.783
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.782
Ca_16482 Cicer arietinum Ca_16482 N 0.782
mgf019910m Mimulus guttatus mgf019910m N 0.782
PK05257.1 Cannabis sativa PK05257.1 N 0.782
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.782
Bo5g081360 Brassica oleracea Bo5g081360 N 0.781
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.778
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.778
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.778
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.778
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.778
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.777
MDP0000144266 Malus domestica MDP0000144266 N 0.776
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.774
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.774
TCM_034881 Theobroma cacao TCM_034881 N 0.774
TT1 Vitis vinifera VIT_18s0001g05860 N 0.774
Ca_21713 Cicer arietinum Ca_21713 N 0.774
Ca_27078 Cicer arietinum Ca_27078 N 0.774
Cla000184 Citrullus lanatus Cla000184 N 0.774
29908.m006047 Ricinus communis 29908.m006047 N 0.774
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.774
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.774
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.774
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.774
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.774
MDP0000142494 Malus domestica MDP0000142494 N 0.774
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.774
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.774
MDP0000573922 Malus domestica MDP0000573922 N 0.771
WIP3 Arabidopsis thaliana AT1G08290 N 0.769
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.769
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.769
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.769
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.769
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.769
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.768
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.768
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.768
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.768
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.768
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.767
WIP6 Arabidopsis thaliana AT1G13290 N 0.767
Bo5g015200 Brassica oleracea Bo5g015200 N 0.767
Bra019822 Brassica rapa Bra019822 N 0.767
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.767
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.767
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.767
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.767
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.767
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.767
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.767
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.767
OBART06G20890 Oryza barthii OBART06G20890 N 0.767
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.767
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.767
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.767
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.767
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.767
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.767
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.767
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.767
TCM_011858 Theobroma cacao TCM_011858 N 0.767
TCM_040610 Theobroma cacao TCM_040610 N 0.767
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.767
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.767
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.767
Ca_08435 Cicer arietinum Ca_08435 N 0.767
Ca_24699 Cicer arietinum Ca_24699 N 0.767
Cla002714 Citrullus lanatus Cla002714 N 0.767
Pm029018 Prunus mume Pm029018 N 0.767
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.767
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.767
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.767
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.767
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.767
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.767
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.767
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.767
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.767
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.767
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.767
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.767
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.767
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.767
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.767
MDP0000303483 Malus domestica MDP0000303483 N 0.767
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.767
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.767
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.767
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.764
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.764
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.764
mgf022981m Mimulus guttatus mgf022981m N 0.764
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.764
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.762
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.762
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.762
F775_11193 Aegilops tauschii F775_11193 N 0.762
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.762
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.762
OB05G26090 Oryza brachyantha OB05G26090 N 0.762
OBART01G37960 Oryza barthii OBART01G37960 N 0.762
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.762
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.762
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.762
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.762
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.762
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.762
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.762
OS01G0859100 Oryza sativa OS01G0859100 N 0.762
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.762
Si022296m.g Setaria italica Si022296m.g N 0.762
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.762
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.762
Bo5g008880 Brassica oleracea Bo5g008880 N 0.759
Bo8g112550 Brassica oleracea Bo8g112550 N 0.759
Bra018638 Brassica rapa Bra018638 N 0.759
Bra031621 Brassica rapa Bra031621 N 0.759
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.758
WIP2 Arabidopsis thaliana AT3G57670 N 0.758
Bo4g111000 Brassica oleracea Bo4g111000 N 0.758
Bo6g073120 Brassica oleracea Bo6g073120 N 0.758
Bo8g092070 Brassica oleracea Bo8g092070 N 0.758
Bra003295 Brassica rapa Bra003295 N 0.758
Bra014612 Brassica rapa Bra014612 N 0.758
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.758
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.758
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.758
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.758
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.758
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.758
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.758
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.758
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.758
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.758
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.758
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.758
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.758
TCM_024788 Theobroma cacao TCM_024788 N 0.758
NTT Vitis vinifera VIT_08s0007g08070 N 0.758
Ca_07269 Cicer arietinum Ca_07269 N 0.758
Cla008187 Citrullus lanatus Cla008187 N 0.758
Cla008675 Citrullus lanatus Cla008675 N 0.758
Pm000471 Prunus mume Pm000471 N 0.758
Pm025853 Prunus mume Pm025853 N 0.758
27810.m000651 Ricinus communis 27810.m000651 N 0.758
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.758
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.758
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.758
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.758
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.758
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.758
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.758
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.758
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.758
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.758
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.758
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.758
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.758
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.758
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.758
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.758
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.758
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.758
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.758
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.758
MDP0000403797 Malus domestica MDP0000403797 N 0.758
MDP0000580545 Malus domestica MDP0000580545 N 0.758
MDP0000601705 Malus domestica MDP0000601705 N 0.758
MDP0000899280 Malus domestica MDP0000899280 N 0.758
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.758
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.758
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.758
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.758
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.758
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.758
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.758
PK03705.1 Cannabis sativa PK03705.1 N 0.758
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.758
Bra007346 Brassica rapa Bra007346 N 0.756