CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g009770.1
(
Solanum lycopersicum
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
Solyc05g009770.1
T129365_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g009770.1.1
C2H2 ZF
205
226
FKCRKCGKNFAVRGDWRTHEKN
Solyc05g009770.1.1
C2H2 ZF
225
251
KNCGKLWFCICGSDFKHKRSLKDHVKA
Links
Other
C2H2 ZF
family TFs
Other
Solanum lycopersicum
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00022p00243980
Amborella trichopoda
AMTR_s00022p00243980
N
0.803
WIP2
Arabidopsis thaliana
AT3G57670
N
0.803
Bo4g111000
Brassica oleracea
Bo4g111000
N
0.803
Bo6g073120
Brassica oleracea
Bo6g073120
N
0.803
Bo8g092070
Brassica oleracea
Bo8g092070
N
0.803
Bra003295
Brassica rapa
Bra003295
N
0.803
Bra014612
Brassica rapa
Bra014612
N
0.803
NTT
Arabidopsis lyrata
fgenesh2_kg.5__2209__AT3G57670.1
N
0.803
GLYMA02G31270
Glycine max
GLYMA02G31270
N
0.803
GLYMA19G32430
Glycine max
GLYMA19G32430
N
0.803
GSMUA_AchrUn_randomG20320_001
Musa acuminata
GSMUA_AchrUn_randomG20320_001
N
0.803
PGSC0003DMG400030271
Solanum tuberosum
PGSC0003DMG400030271
N
0.803
PGSC0003DMG400046144
Solanum tuberosum
PGSC0003DMG400046144
N
0.803
POPTR_0016s05310
Populus trichocarpa
POPTR_0016s05310
N
0.803
PRUPE_ppa008185mg
Prunus persica
PRUPE_ppa008185mg
N
0.803
TCM_024788
Theobroma cacao
TCM_024788
N
0.803
NTT
Vitis vinifera
VIT_08s0007g08070
N
0.803
Ca_07269
Cicer arietinum
Ca_07269
N
0.803
Cla008187
Citrullus lanatus
Cla008187
N
0.803
Pm025853
Prunus mume
Pm025853
N
0.803
27810.m000651
Ricinus communis
27810.m000651
N
0.803
cassava35956.valid.m1
Manihot esculenta
cassava35956.valid.m1
N
0.803
cassava41737.m1
Manihot esculenta
cassava41737.m1
N
0.803
Cucsa.242970
Cucumis sativus
Cucsa.242970
N
0.803
Cucsa.357260
Cucumis sativus
Cucsa.357260
N
0.803
Bostr.20903s0019
Boechera stricta
Bostr.20903s0019
N
0.803
Cagra.0210s0004
Capsella grandiflora
Cagra.0210s0004
N
0.803
Carubv10017428m.g
Capsella rubella
Carubv10017428m.g
N
0.803
Ciclev10005189m.g
Citrus clementina
Ciclev10005189m.g
N
0.803
Eucgr.A02400
Eucalyptus grandis
Eucgr.A02400
N
0.803
evm.TU.supercontig_84.74
Carica papaya
evm.TU.supercontig_84.74
N
0.803
gene14361-v1.0-hybrid
Fragaria vesca
gene14361-v1.0-hybrid
N
0.803
Gorai.002G152600
Gossypium raimondii
Gorai.002G152600
N
0.803
Gorai.003G089200
Gossypium raimondii
Gorai.003G089200
N
0.803
MDP0000601705
Malus domestica
MDP0000601705
N
0.803
orange1.1g040794m.g
Citrus sinensis
orange1.1g040794m.g
N
0.803
SapurV1A.0018s0090
Salix purpurea
SapurV1A.0018s0090
N
0.803
Thhalv10006035m.g
Eutrema salsugineum
Thhalv10006035m.g
N
0.803
PK03705.1
Cannabis sativa
PK03705.1
N
0.803
chr1.CM0318.720.nd
Lotus japonicus
chr1.CM0318.720.nd
N
0.803
Bra007346
Brassica rapa
Bra007346
N
0.802
GSMUA_AchrUn_randomG22660_001
Musa acuminata
GSMUA_AchrUn_randomG22660_001
N
0.797
PGSC0003DMG400013609
Solanum tuberosum
PGSC0003DMG400013609
N
0.797
PRUPE_ppa024429mg
Prunus persica
PRUPE_ppa024429mg
N
0.797
Solyc11g062060.1
Solanum lycopersicum
Solyc11g062060.1
N
0.797
Cla008675
Citrullus lanatus
Cla008675
N
0.797
Pm000471
Prunus mume
Pm000471
N
0.797
mgf019910m
Mimulus guttatus
mgf019910m
N
0.797
Ciclev10017716m.g
Citrus clementina
Ciclev10017716m.g
N
0.797
gene20598-v1.0-hybrid
Fragaria vesca
gene20598-v1.0-hybrid
N
0.797
Gorai.006G138700
Gossypium raimondii
Gorai.006G138700
N
0.797
MDP0000403797
Malus domestica
MDP0000403797
N
0.797
MDP0000580545
Malus domestica
MDP0000580545
N
0.797
orange1.1g019587m.g
Citrus sinensis
orange1.1g019587m.g
N
0.797
GSMUA_Achr3G11050_001
Musa acuminata
GSMUA_Achr3G11050_001
N
0.794
GSMUA_Achr6G03470_001
Musa acuminata
GSMUA_Achr6G03470_001
N
0.794
cassava5227.m1
Manihot esculenta
cassava5227.m1
N
0.794
AMTR_s00093p00164790
Amborella trichopoda
AMTR_s00093p00164790
N
0.793
GLYMA01G22120
Glycine max
GLYMA01G22120
N
0.793
GLYMA02G10970
Glycine max
GLYMA02G10970
N
0.793
MTR_1g093095
Medicago truncatula
MTR_1g093095
N
0.793
POPTR_0010s13910
Populus trichocarpa
POPTR_0010s13910
N
0.793
PRUPE_ppa020013m2g
Prunus persica
PRUPE_ppa020013m2g
N
0.793
SELMODRAFT_57106
Selaginella moellendorffii
SELMODRAFT_57106
N
0.793
SELMODRAFT_57114
Selaginella moellendorffii
SELMODRAFT_57114
N
0.793
TCM_011858
Theobroma cacao
TCM_011858
N
0.793
DOT5
Vitis vinifera
VIT_01s0011g03100
N
0.793
Ca_08435
Cicer arietinum
Ca_08435
N
0.793
Ca_24699
Cicer arietinum
Ca_24699
N
0.793
Cla002714
Citrullus lanatus
Cla002714
N
0.793
Pm029018
Prunus mume
Pm029018
N
0.793
cassava46219.m1
Manihot esculenta
cassava46219.m1
N
0.793
Cucsa.248320
Cucumis sativus
Cucsa.248320
N
0.793
Aquca_026_00228
Aquilegia coerulea
Aquca_026_00228
N
0.793
Eucgr.B03047
Eucalyptus grandis
Eucgr.B03047
N
0.793
evm.TU.supercontig_1.215
Carica papaya
evm.TU.supercontig_1.215
N
0.793
Gorai.013G080100
Gossypium raimondii
Gorai.013G080100
N
0.793
Lus10021700.g
Linum usitatissimum
Lus10021700.g
N
0.793
Lus10035044.g
Linum usitatissimum
Lus10035044.g
N
0.793
MDP0000303483
Malus domestica
MDP0000303483
N
0.793
chr2.CM1731.90.nc
Lotus japonicus
chr2.CM1731.90.nc
N
0.793
POPTR_0003s20400
Populus trichocarpa
POPTR_0003s20400
N
0.788
30169.m006417
Ricinus communis
30169.m006417
N
0.788
SapurV1A.0009s0540
Salix purpurea
SapurV1A.0009s0540
N
0.788
WIP6
Arabidopsis thaliana
AT1G13290
N
0.787
Bo5g015200
Brassica oleracea
Bo5g015200
N
0.787
Bra019822
Brassica rapa
Bra019822
N
0.787
GLYMA10G34770
Glycine max
GLYMA10G34770
N
0.787
GLYMA20G32750
Glycine max
GLYMA20G32750
N
0.787
GRMZM2G061545
Zea mays
GRMZM2G061545
N
0.787
GSMUA_Achr3G11870_001
Musa acuminata
GSMUA_Achr3G11870_001
N
0.787
MLOC_65351
Hordeum vulgare
MLOC_65351
N
0.787
OBART06G20890
Oryza barthii
OBART06G20890
N
0.787
SELMODRAFT_110681
Selaginella moellendorffii
SELMODRAFT_110681
N
0.787
SELMODRAFT_128378
Selaginella moellendorffii
SELMODRAFT_128378
N
0.787
SELMODRAFT_36986
Selaginella moellendorffii
SELMODRAFT_36986
N
0.787
SELMODRAFT_36987
Selaginella moellendorffii
SELMODRAFT_36987
N
0.787
TCM_040610
Theobroma cacao
TCM_040610
N
0.787
Traes_7AL_1070DBD71
Triticum aestivum
Traes_7AL_1070DBD71
N
0.787
TRIUR3_23735
Triticum urartu
TRIUR3_23735
N
0.787
Ca_21713
Cicer arietinum
Ca_21713
N
0.787
e_gw1.203.23.1
Physcomitrella patens
e_gw1.203.23.1
N
0.787
gw1.359.34.1
Physcomitrella patens
gw1.359.34.1
N
0.787
Bostr.13671s0117
Boechera stricta
Bostr.13671s0117
N
0.787
Cagra.3501s0170
Capsella grandiflora
Cagra.3501s0170
N
0.787
Carubv10012013m.g
Capsella rubella
Carubv10012013m.g
N
0.787
Eucgr.J00788
Eucalyptus grandis
Eucgr.J00788
N
0.787
Gorai.013G250800
Gossypium raimondii
Gorai.013G250800
N
0.787
Thhalv10009489m.g
Eutrema salsugineum
Thhalv10009489m.g
N
0.787
Ciclev10033535m.g
Citrus clementina
Ciclev10033535m.g
N
0.784
gene03867-v1.0-hybrid
Fragaria vesca
gene03867-v1.0-hybrid
N
0.784
MDP0000899280
Malus domestica
MDP0000899280
N
0.784
orange1.1g046329m.g
Citrus sinensis
orange1.1g046329m.g
N
0.784
cassava34009.m1
Manihot esculenta
cassava34009.m1
N
0.782
GSMUA_Achr8G25650_001
Musa acuminata
GSMUA_Achr8G25650_001
N
0.780
GSMUA_Achr6G01410_001
Musa acuminata
GSMUA_Achr6G01410_001
N
0.778
Lus10031271.g
Linum usitatissimum
Lus10031271.g
N
0.778
Lus10031838.g
Linum usitatissimum
Lus10031838.g
N
0.778
BGIOSGA030081
Oryza indica
BGIOSGA030081
N
0.774
GSMUA_Achr3G03850_001
Musa acuminata
GSMUA_Achr3G03850_001
N
0.774
OBART09G03640
Oryza barthii
OBART09G03640
N
0.774
OGLUM09G04400
Oryza glumaepatula
OGLUM09G04400
N
0.774
OMERI09G02890
Oryza meridionalis
OMERI09G02890
N
0.774
ONIVA02G14580
Oryza nivara
ONIVA02G14580
N
0.774
OPUNC09G03280
Oryza punctata
OPUNC09G03280
N
0.774
ORGLA09G0176200
Oryza glaberrima
ORGLA09G0176200
N
0.774
ORUFI09G04060
Oryza rufipogon
ORUFI09G04060
N
0.774
POPTR_0001s27490
Populus trichocarpa
POPTR_0001s27490
N
0.774
POPTR_0009s06700
Populus trichocarpa
POPTR_0009s06700
N
0.774
TCM_005892
Theobroma cacao
TCM_005892
N
0.774
cassava39829.m1
Manihot esculenta
cassava39829.m1
N
0.774
Gorai.004G037000
Gossypium raimondii
Gorai.004G037000
N
0.774
Gorai.004G065400
Gossypium raimondii
Gorai.004G065400
N
0.774
Gorai.007G177300
Gossypium raimondii
Gorai.007G177300
N
0.774
VIT_06s0004g01870
Vitis vinifera
VIT_06s0004g01870
N
0.773
BGIOSGA030484
Oryza indica
BGIOSGA030484
N
0.772
BRADI4G27770
Brachypodium distachyon
BRADI4G27770
N
0.772
GRMZM2G150011
Zea mays
GRMZM2G150011
N
0.772
LPERR09G03450
Leersia perrieri
LPERR09G03450
N
0.772
MLOC_54308
Hordeum vulgare
MLOC_54308
N
0.772
OGLUM09G05550
Oryza glumaepatula
OGLUM09G05550
N
0.772
OMERI09G03940
Oryza meridionalis
OMERI09G03940
N
0.772
ONIVA08G08420
Oryza nivara
ONIVA08G08420
N
0.772
OPUNC09G04260
Oryza punctata
OPUNC09G04260
N
0.772
ORUFI09G05390
Oryza rufipogon
ORUFI09G05390
N
0.772
OS09G0307400
Oryza sativa
OS09G0307400
N
0.772
Sb02g020840
Sorghum bicolor
Sb02g020840
N
0.772
Si030360m.g
Setaria italica
Si030360m.g
N
0.772
Traes_5BL_46BDE583B
Triticum aestivum
Traes_5BL_46BDE583B
N
0.772
Traes_5DL_98FA0887C
Triticum aestivum
Traes_5DL_98FA0887C
N
0.772
TRIUR3_30537
Triticum urartu
TRIUR3_30537
N
0.772
Pavir.Ba03009
Panicum virgatum
Pavir.Ba03009
N
0.772
GLYMA08G16390
Glycine max
GLYMA08G16390
N
0.767
GLYMA12G36660
Glycine max
GLYMA12G36660
N
0.767
GLYMA13G27371
Glycine max
GLYMA13G27371
N
0.767
GLYMA15G42870
Glycine max
GLYMA15G42870
N
0.767
GSMUA_Achr9G12600_001
Musa acuminata
GSMUA_Achr9G12600_001
N
0.767
Cla015481
Citrullus lanatus
Cla015481
N
0.767
30061.m000294
Ricinus communis
30061.m000294
N
0.767
Cucsa.050260
Cucumis sativus
Cucsa.050260
N
0.767
Cucsa.065460
Cucumis sativus
Cucsa.065460
N
0.767
mgf022319m
Mimulus guttatus
mgf022319m
N
0.767
GSMUA_Achr4G01560_001
Musa acuminata
GSMUA_Achr4G01560_001
N
0.764
PGSC0003DMG400006808
Solanum tuberosum
PGSC0003DMG400006808
N
0.764
Solyc01g087050.2
Solanum lycopersicum
Solyc01g087050.2
N
0.764
evm.TU.contig_31438
Carica papaya
evm.TU.contig_31438
N
0.764
Lus10029525.g
Linum usitatissimum
Lus10029525.g
N
0.764
Lus10039613.g
Linum usitatissimum
Lus10039613.g
N
0.764
SapurV1A.1001s0040
Salix purpurea
SapurV1A.1001s0040
N
0.764
BGIOSGA023262
Oryza indica
BGIOSGA023262
N
0.763
BRADI1G36067
Brachypodium distachyon
BRADI1G36067
N
0.763
GRMZM2G435357
Zea mays
GRMZM2G435357
N
0.763
GRMZM2G436344
Zea mays
GRMZM2G436344
N
0.763
LPERR06G17470
Leersia perrieri
LPERR06G17470
N
0.763
OB06G28740
Oryza brachyantha
OB06G28740
N
0.763
OGLUM06G22000
Oryza glumaepatula
OGLUM06G22000
N
0.763
ONIVA06G24670
Oryza nivara
ONIVA06G24670
N
0.763
OPUNC06G19020
Oryza punctata
OPUNC06G19020
N
0.763
ORGLA06G0173600
Oryza glaberrima
ORGLA06G0173600
N
0.763
ORUFI06G22350
Oryza rufipogon
ORUFI06G22350
N
0.763
OS06G0612300
Oryza sativa
OS06G0612300
N
0.763
Sb10g024040
Sorghum bicolor
Sb10g024040
N
0.763
Si006616m.g
Setaria italica
Si006616m.g
N
0.763
orange1.1g037234m.g
Citrus sinensis
orange1.1g037234m.g
N
0.763
Pavir.Db00765
Panicum virgatum
Pavir.Db00765
N
0.763
MDP0000144266
Malus domestica
MDP0000144266
N
0.762
Bo5g081360
Brassica oleracea
Bo5g081360
N
0.761
OBART02G07320
Oryza barthii
OBART02G07320
N
0.761
ORGLA02G0068500
Oryza glaberrima
ORGLA02G0068500
N
0.761
MDP0000142494
Malus domestica
MDP0000142494
N
0.761
GLYMA13G01720
Glycine max
GLYMA13G01720
N
0.760
GLYMA14G35140
Glycine max
GLYMA14G35140
N
0.760
Ca_27078
Cicer arietinum
Ca_27078
N
0.760
29908.m006047
Ricinus communis
29908.m006047
N
0.760
cassava44390.m1
Manihot esculenta
cassava44390.m1
N
0.760
BGIOSGA031001
Oryza indica
BGIOSGA031001
N
0.758
BRADI3G39820
Brachypodium distachyon
BRADI3G39820
N
0.758
GRMZM2G071101
Zea mays
GRMZM2G071101
N
0.758
GRMZM2G445684
Zea mays
GRMZM2G445684
N
0.758
GSMUA_Achr11G18950_001
Musa acuminata
GSMUA_Achr11G18950_001
N
0.758
GSMUA_Achr5G26210_001
Musa acuminata
GSMUA_Achr5G26210_001
N
0.758
LPERR08G16620
Leersia perrieri
LPERR08G16620
N
0.758
LPERR09G10700
Leersia perrieri
LPERR09G10700
N
0.758
OB08G26650
Oryza brachyantha
OB08G26650
N
0.758
OBART08G19670
Oryza barthii
OBART08G19670
N
0.758
OGLUM08G20830
Oryza glumaepatula
OGLUM08G20830
N
0.758
OGLUM09G15150
Oryza glumaepatula
OGLUM09G15150
N
0.758
OMERI08G16450
Oryza meridionalis
OMERI08G16450
N
0.758
OMERI09G11270
Oryza meridionalis
OMERI09G11270
N
0.758
ONIVA08G21960
Oryza nivara
ONIVA08G21960
N
0.758
ONIVA09G15100
Oryza nivara
ONIVA09G15100
N
0.758
OPUNC08G17810
Oryza punctata
OPUNC08G17810
N
0.758
OPUNC09G12930
Oryza punctata
OPUNC09G12930
N
0.758
ORGLA08G0173000
Oryza glaberrima
ORGLA08G0173000
N
0.758
ORGLA09G0111700
Oryza glaberrima
ORGLA09G0111700
N
0.758
ORUFI09G15680
Oryza rufipogon
ORUFI09G15680
N
0.758
OS08G0504000
Oryza sativa
OS08G0504000
N
0.758
OS09G0485600
Oryza sativa
OS09G0485600
N
0.758
Sb07g028010
Sorghum bicolor
Sb07g028010
N
0.758
Si013819m.g
Setaria italica
Si013819m.g
N
0.758
Pavir.Fa00506
Panicum virgatum
Pavir.Fa00506
N
0.758
Pavir.Fb01879
Panicum virgatum
Pavir.Fb01879
N
0.758