Pavir.Ba03009 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ba03009 T143318_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba03009.1.p C2H2 ZF 261 282
Pavir.Ba03009.1.p C2H2 ZF 281 307

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.827
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.827
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.827
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.827
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.827
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.827
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.827
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.827
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.827
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.827
OS09G0307400 Oryza sativa OS09G0307400 N 0.827
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.827
Si030360m.g Setaria italica Si030360m.g N 0.827
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.827
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.827
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.827
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.821
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.805
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.805
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.795
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.792
OBART09G03640 Oryza barthii OBART09G03640 N 0.792
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.792
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.792
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.792
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.792
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.792
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.792
OBART02G07320 Oryza barthii OBART02G07320 N 0.791
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.791
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.791
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.791
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.791
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.791
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.791
WIP6 Arabidopsis thaliana AT1G13290 N 0.788
Bo5g015200 Brassica oleracea Bo5g015200 N 0.788
Bra019822 Brassica rapa Bra019822 N 0.788
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.788
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.788
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.788
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.788
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.788
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.788
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.782
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.782
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.782
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.782
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.782
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.782
OBART06G20890 Oryza barthii OBART06G20890 N 0.782
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.782
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.782
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.782
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.782
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.782
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.782
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.782
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.782
TCM_011858 Theobroma cacao TCM_011858 N 0.782
TCM_040610 Theobroma cacao TCM_040610 N 0.782
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.782
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.782
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.782
Ca_08435 Cicer arietinum Ca_08435 N 0.782
Ca_21713 Cicer arietinum Ca_21713 N 0.782
Ca_24699 Cicer arietinum Ca_24699 N 0.782
Cla002714 Citrullus lanatus Cla002714 N 0.782
Pm029018 Prunus mume Pm029018 N 0.782
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.782
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.782
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.782
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.782
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.782
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.782
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.782
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.782
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.782
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.782
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.782
MDP0000303483 Malus domestica MDP0000303483 N 0.782
MDP0000899280 Malus domestica MDP0000899280 N 0.782
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.782
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.781
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.781
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.781
30169.m006417 Ricinus communis 30169.m006417 N 0.781
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.781
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.781
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.776
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.772
WIP2 Arabidopsis thaliana AT3G57670 N 0.772
Bo4g111000 Brassica oleracea Bo4g111000 N 0.772
Bo5g081360 Brassica oleracea Bo5g081360 N 0.772
Bo6g073120 Brassica oleracea Bo6g073120 N 0.772
Bo8g092070 Brassica oleracea Bo8g092070 N 0.772
Bra003295 Brassica rapa Bra003295 N 0.772
Bra014612 Brassica rapa Bra014612 N 0.772
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.772
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.772
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.772
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.772
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.772
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.772
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.772
OB05G26090 Oryza brachyantha OB05G26090 N 0.772
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.772
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.772
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.772
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.772
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.772
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.772
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.772
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.772
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.772
TCM_024788 Theobroma cacao TCM_024788 N 0.772
NTT Vitis vinifera VIT_08s0007g08070 N 0.772
Ca_07269 Cicer arietinum Ca_07269 N 0.772
Cla008187 Citrullus lanatus Cla008187 N 0.772
Cla008675 Citrullus lanatus Cla008675 N 0.772
Pm000471 Prunus mume Pm000471 N 0.772
Pm025853 Prunus mume Pm025853 N 0.772
27810.m000651 Ricinus communis 27810.m000651 N 0.772
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.772
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.772
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.772
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.772
mgf019910m Mimulus guttatus mgf019910m N 0.772
mgf022319m Mimulus guttatus mgf022319m N 0.772
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.772
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.772
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.772
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.772
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.772
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.772
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.772
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.772
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.772
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.772
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.772
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.772
MDP0000403797 Malus domestica MDP0000403797 N 0.772
MDP0000580545 Malus domestica MDP0000580545 N 0.772
MDP0000601705 Malus domestica MDP0000601705 N 0.772
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.772
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.772
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.772
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.772
PK03705.1 Cannabis sativa PK03705.1 N 0.772
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.772
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.771
Bra007346 Brassica rapa Bra007346 N 0.770
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.768
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.768
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.768
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.768
OS02G0196100 Oryza sativa OS02G0196100 N 0.767
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.761
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.761
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.761
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.761
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.761
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.761
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.761
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.761
TCM_041441 Theobroma cacao TCM_041441 N 0.761
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.761
Ca_07051 Cicer arietinum Ca_07051 N 0.761
Pm001374 Prunus mume Pm001374 N 0.761
30055.m001542 Ricinus communis 30055.m001542 N 0.761
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.761
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.761
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.761
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.761
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.761
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.761
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.761
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.761
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.761
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.761
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.761
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.761
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.761
MDP0000131949 Malus domestica MDP0000131949 N 0.761
MDP0000300013 Malus domestica MDP0000300013 N 0.761
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.761
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.761
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.761
PK05257.1 Cannabis sativa PK05257.1 N 0.761
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.761
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.759
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.758
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.758
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.758
F775_14972 Aegilops tauschii F775_14972 N 0.758
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.758
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.758
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.758
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.758
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.758
OB06G28740 Oryza brachyantha OB06G28740 N 0.758
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.758
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.758
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.758
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.758
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.758
OS06G0612300 Oryza sativa OS06G0612300 N 0.758
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.758
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.758
Si006616m.g Setaria italica Si006616m.g N 0.758
Si029897m.g Setaria italica Si029897m.g N 0.758
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.758
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.758
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.758
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.758
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.758
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.758
Ca_16482 Cicer arietinum Ca_16482 N 0.756