chr3.CM1144.10.nc (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 chr3.CM1144.10.nc T146057_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM1144.10.nc C2H2 ZF 168 190
chr3.CM1144.10.nc C2H2 ZF 189 215

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.821
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.821
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.821
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.821
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.821
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.821
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.821
TCM_041441 Theobroma cacao TCM_041441 N 0.821
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.821
Pm001374 Prunus mume Pm001374 N 0.821
30055.m001542 Ricinus communis 30055.m001542 N 0.821
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.821
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.821
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.821
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.821
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.821
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.821
MDP0000131949 Malus domestica MDP0000131949 N 0.821
MDP0000300013 Malus domestica MDP0000300013 N 0.821
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.821
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.821
Ca_16482 Cicer arietinum Ca_16482 N 0.816
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.815
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.815
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.805
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.805
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.805
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.805
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.805
Cla000184 Citrullus lanatus Cla000184 N 0.802
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.802
Ca_07051 Cicer arietinum Ca_07051 N 0.797
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.797
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.797
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.797
PK05257.1 Cannabis sativa PK05257.1 N 0.797
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.796
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.796
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.796
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.796
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.796
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.796
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.796
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.796
TCM_005892 Theobroma cacao TCM_005892 N 0.796
30061.m000294 Ricinus communis 30061.m000294 N 0.796
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.796
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.792
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.791
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.791
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.791
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.791
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.791
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.791
MDP0000144266 Malus domestica MDP0000144266 N 0.790
MDP0000142494 Malus domestica MDP0000142494 N 0.789
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.782
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.782
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.782
F775_14972 Aegilops tauschii F775_14972 N 0.782
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.782
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.782
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.782
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.782
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.782
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.782
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.782
OB08G26650 Oryza brachyantha OB08G26650 N 0.782
OBART08G19670 Oryza barthii OBART08G19670 N 0.782
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.782
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.782
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.782
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.782
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.782
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.782
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.782
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.782
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.782
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.782
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.782
OS08G0504000 Oryza sativa OS08G0504000 N 0.782
OS09G0485600 Oryza sativa OS09G0485600 N 0.782
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.782
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.782
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.782
Si013819m.g Setaria italica Si013819m.g N 0.782
Si029897m.g Setaria italica Si029897m.g N 0.782
TCM_034881 Theobroma cacao TCM_034881 N 0.782
TCM_040610 Theobroma cacao TCM_040610 N 0.782
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.782
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.782
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.782
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.782
TT1 Vitis vinifera VIT_18s0001g05860 N 0.782
29908.m006047 Ricinus communis 29908.m006047 N 0.782
30169.m006417 Ricinus communis 30169.m006417 N 0.782
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.782
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.782
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.782
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.782
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.782
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.782
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.782
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.782
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.782
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.782
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.782
MDP0000573922 Malus domestica MDP0000573922 N 0.780
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.780
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.780
WIP3 Arabidopsis thaliana AT1G08290 N 0.779
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.779
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.779
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.779
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.779
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.778
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.776
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.776
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.776
OBART06G20890 Oryza barthii OBART06G20890 N 0.776
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.776
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.776
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.776
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.776
Ca_21713 Cicer arietinum Ca_21713 N 0.776
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.776
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.776
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.776
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.776
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.776
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.773
Bo5g081360 Brassica oleracea Bo5g081360 N 0.772
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.772
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.772
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.772
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.772
Cla015481 Citrullus lanatus Cla015481 N 0.772
Pm000471 Prunus mume Pm000471 N 0.772
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.772
mgf022319m Mimulus guttatus mgf022319m N 0.772
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.772
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.772
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.772
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.772
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.772
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.772
MDP0000403797 Malus domestica MDP0000403797 N 0.772
MDP0000580545 Malus domestica MDP0000580545 N 0.772
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.772
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.771
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.771
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.771
F775_11193 Aegilops tauschii F775_11193 N 0.771
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.771
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.771
OB05G26090 Oryza brachyantha OB05G26090 N 0.771
OBART01G37960 Oryza barthii OBART01G37960 N 0.771
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.771
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.771
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.771
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.771
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.771
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.771
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.771
OS01G0859100 Oryza sativa OS01G0859100 N 0.771
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.771
Si022296m.g Setaria italica Si022296m.g N 0.771
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.771
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.771
Bo5g008880 Brassica oleracea Bo5g008880 N 0.769
Bo8g112550 Brassica oleracea Bo8g112550 N 0.769
Bra018638 Brassica rapa Bra018638 N 0.769
Bra031621 Brassica rapa Bra031621 N 0.769
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.768
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.768
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.768
mgf022981m Mimulus guttatus mgf022981m N 0.768
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.768
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.767
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.766
WIP2 Arabidopsis thaliana AT3G57670 N 0.766
Bo4g111000 Brassica oleracea Bo4g111000 N 0.766
Bo6g073120 Brassica oleracea Bo6g073120 N 0.766
Bo8g092070 Brassica oleracea Bo8g092070 N 0.766
Bra003295 Brassica rapa Bra003295 N 0.766
Bra014612 Brassica rapa Bra014612 N 0.766
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.766
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.766
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.766
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.766
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.766
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.766
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.766
TCM_024788 Theobroma cacao TCM_024788 N 0.766
NTT Vitis vinifera VIT_08s0007g08070 N 0.766
Ca_07269 Cicer arietinum Ca_07269 N 0.766
Cla008187 Citrullus lanatus Cla008187 N 0.766
Pm025853 Prunus mume Pm025853 N 0.766
27810.m000651 Ricinus communis 27810.m000651 N 0.766
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.766
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.766
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.766
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.766
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.766
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.766
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.766
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.766
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.766
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.766
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.766
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.766
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.766
MDP0000601705 Malus domestica MDP0000601705 N 0.766
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.766
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.766
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.766
PK03705.1 Cannabis sativa PK03705.1 N 0.766
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.766
Bra007346 Brassica rapa Bra007346 N 0.764
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.764
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.762
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.761
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.761
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.761
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.761
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.761
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.761
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.761
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.761
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.761
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.761
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.761
OS09G0307400 Oryza sativa OS09G0307400 N 0.761
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.761
Si030360m.g Setaria italica Si030360m.g N 0.761
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.761
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.761
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.761
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.761
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.761
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.761
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.761
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.758
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.758
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.758
Ca_27078 Cicer arietinum Ca_27078 N 0.758
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.758
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.758
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.758
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.758