POPTR_0001s05630 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0001s05630 T126779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s05630.1 C2H2 ZF 250 271
POPTR_0001s05630.1 C2H2 ZF 271 299

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.798
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.792
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.792
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.782
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.782
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.782
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.782
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.782
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.782
OB08G26650 Oryza brachyantha OB08G26650 N 0.782
OBART08G19670 Oryza barthii OBART08G19670 N 0.782
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.782
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.782
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.782
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.782
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.782
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.782
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.782
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.782
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.782
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.782
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.782
OS08G0504000 Oryza sativa OS08G0504000 N 0.782
OS09G0485600 Oryza sativa OS09G0485600 N 0.782
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.782
Si013819m.g Setaria italica Si013819m.g N 0.782
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.782
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.782
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.781
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N 0.781
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.781
F775_11193 Aegilops tauschii F775_11193 N 0.781
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.781
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.781
OB05G26090 Oryza brachyantha OB05G26090 N 0.781
OBART01G37960 Oryza barthii OBART01G37960 N 0.781
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.781
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.781
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.781
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.781
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.781
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.781
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.781
OS01G0859100 Oryza sativa OS01G0859100 N 0.781
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.781
Si022296m.g Setaria italica Si022296m.g N 0.781
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.781
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.781
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.778
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.777
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.777
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.777
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.777
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.777
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.776
F775_14972 Aegilops tauschii F775_14972 N 0.776
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.776
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.776
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.776
Si029897m.g Setaria italica Si029897m.g N 0.776
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.776
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.776
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.776
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.776
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.776
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.774
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.774
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.774
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.774
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.774
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.774
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.774
TCM_041441 Theobroma cacao TCM_041441 N 0.774
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.774
Ca_07051 Cicer arietinum Ca_07051 N 0.774
Pm001374 Prunus mume Pm001374 N 0.774
30055.m001542 Ricinus communis 30055.m001542 N 0.774
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.774
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.774
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.774
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.774
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.774
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.774
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.774
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.774
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.774
MDP0000131949 Malus domestica MDP0000131949 N 0.774
MDP0000300013 Malus domestica MDP0000300013 N 0.774
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.774
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.774
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.768
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.768
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.768
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.768
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.768
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.768
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.768
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.768
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.768
TCM_005892 Theobroma cacao TCM_005892 N 0.768
Ca_16482 Cicer arietinum Ca_16482 N 0.768
Cla015481 Citrullus lanatus Cla015481 N 0.768
30061.m000294 Ricinus communis 30061.m000294 N 0.768
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.768
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.768
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.768
mgf019910m Mimulus guttatus mgf019910m N 0.768
mgf022319m Mimulus guttatus mgf022319m N 0.768
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.768
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.768
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.768
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.768
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.768
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.768
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.768
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.768
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.768
PK05257.1 Cannabis sativa PK05257.1 N 0.768
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.768
Bo5g008880 Brassica oleracea Bo5g008880 N 0.765
Bo8g112550 Brassica oleracea Bo8g112550 N 0.765
Bra018638 Brassica rapa Bra018638 N 0.765
Bra031621 Brassica rapa Bra031621 N 0.765
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.764
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.764
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.764
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.763
Bo5g081360 Brassica oleracea Bo5g081360 N 0.762
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.758
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.758
MDP0000144266 Malus domestica MDP0000144266 N 0.757