orange1.1g037234m.g (Citrus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 orange1.1g037234m.g T143276_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g037234m C2H2 ZF 6 25
orange1.1g037234m C2H2 ZF 24 53

Links

Other C2H2 ZF family TFs
Other Citrus sinensis TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.799
30061.m000294 Ricinus communis 30061.m000294 N 0.799
mgf022319m Mimulus guttatus mgf022319m N 0.799
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.792
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.792
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.792
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.792
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.792
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.792
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.792
TCM_005892 Theobroma cacao TCM_005892 N 0.792
Cla015481 Citrullus lanatus Cla015481 N 0.792
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.792
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.792
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.792
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.792
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.792
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.792
Bo5g081360 Brassica oleracea Bo5g081360 N 0.786
TCM_034881 Theobroma cacao TCM_034881 N 0.785
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.785
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.785
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.785
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.785
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.785
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.783
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.783
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.783
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.783
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.783
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.783
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.783
OB08G26650 Oryza brachyantha OB08G26650 N 0.783
OBART08G19670 Oryza barthii OBART08G19670 N 0.783
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.783
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.783
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.783
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.783
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.783
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.783
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.783
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.783
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.783
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.783
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.783
OS08G0504000 Oryza sativa OS08G0504000 N 0.783
OS09G0485600 Oryza sativa OS09G0485600 N 0.783
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.783
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.783
Si013819m.g Setaria italica Si013819m.g N 0.783
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.783
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.783
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.783
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.783
MDP0000573922 Malus domestica MDP0000573922 N 0.783
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.783
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.783
MDP0000144266 Malus domestica MDP0000144266 N 0.781
MDP0000142494 Malus domestica MDP0000142494 N 0.780
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.779
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.779
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.779
TT1 Vitis vinifera VIT_18s0001g05860 N 0.779
Ca_27078 Cicer arietinum Ca_27078 N 0.779
29908.m006047 Ricinus communis 29908.m006047 N 0.779
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.779
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.779
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.779
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.777
F775_14972 Aegilops tauschii F775_14972 N 0.777
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.777
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.777
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.777
Si029897m.g Setaria italica Si029897m.g N 0.777
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.777
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.777
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.777
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.777
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.777
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.776
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.776
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.773
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.773
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.773
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.773
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.773
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.773
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.773
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.773
TCM_041441 Theobroma cacao TCM_041441 N 0.773
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.773
Ca_07051 Cicer arietinum Ca_07051 N 0.773
Pm001374 Prunus mume Pm001374 N 0.773
30055.m001542 Ricinus communis 30055.m001542 N 0.773
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.773
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.773
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.773
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.773
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.773
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.773
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.773
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.773
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.773
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.773
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.773
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.773
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.773
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.773
MDP0000131949 Malus domestica MDP0000131949 N 0.773
MDP0000300013 Malus domestica MDP0000300013 N 0.773
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.773
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.773
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.773
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.773
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.769
Ca_16482 Cicer arietinum Ca_16482 N 0.768
PK05257.1 Cannabis sativa PK05257.1 N 0.767
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.767
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.766
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.766
mgf022981m Mimulus guttatus mgf022981m N 0.766
Bo5g008880 Brassica oleracea Bo5g008880 N 0.764
Bo8g112550 Brassica oleracea Bo8g112550 N 0.764
Bra018638 Brassica rapa Bra018638 N 0.764
Bra031621 Brassica rapa Bra031621 N 0.764
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.763
WIP2 Arabidopsis thaliana AT3G57670 N 0.763
Bo4g111000 Brassica oleracea Bo4g111000 N 0.763
Bo6g073120 Brassica oleracea Bo6g073120 N 0.763
Bo8g092070 Brassica oleracea Bo8g092070 N 0.763
Bra003295 Brassica rapa Bra003295 N 0.763
Bra014612 Brassica rapa Bra014612 N 0.763
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.763
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.763
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.763
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.763
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.763
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.763
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.763
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.763
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.763
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.763
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.763
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.763
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.763
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.763
TCM_024788 Theobroma cacao TCM_024788 N 0.763
NTT Vitis vinifera VIT_08s0007g08070 N 0.763
Ca_07269 Cicer arietinum Ca_07269 N 0.763
Cla008187 Citrullus lanatus Cla008187 N 0.763
Cla008675 Citrullus lanatus Cla008675 N 0.763
Pm000471 Prunus mume Pm000471 N 0.763
Pm025853 Prunus mume Pm025853 N 0.763
27810.m000651 Ricinus communis 27810.m000651 N 0.763
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.763
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.763
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.763
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.763
mgf019910m Mimulus guttatus mgf019910m N 0.763
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.763
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.763
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.763
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.763
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.763
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.763
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.763
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.763
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.763
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.763
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.763
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.763
MDP0000403797 Malus domestica MDP0000403797 N 0.763
MDP0000580545 Malus domestica MDP0000580545 N 0.763
MDP0000601705 Malus domestica MDP0000601705 N 0.763
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.763
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.763
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.763
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.763
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.763
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.763
PK03705.1 Cannabis sativa PK03705.1 N 0.763
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.763
Bra007346 Brassica rapa Bra007346 N 0.761
Cla000184 Citrullus lanatus Cla000184 N 0.760
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.760
WIP6 Arabidopsis thaliana AT1G13290 N 0.759
Bo5g015200 Brassica oleracea Bo5g015200 N 0.759
Bra019822 Brassica rapa Bra019822 N 0.759
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.759
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.759
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.759
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.759
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.759
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.759
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.758
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.758