Gorai.004G065400 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.004G065400 T143006_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G065400.1 C2H2 ZF 263 284
Gorai.004G065400.1 C2H2 ZF 283 309

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla015481 Citrullus lanatus Cla015481 N 0.821
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.821
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.821
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.817
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.814
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.814
Ca_27078 Cicer arietinum Ca_27078 N 0.814
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.803
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.803
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.803
TCM_005892 Theobroma cacao TCM_005892 N 0.803
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.803
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.803
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.803
SapurV1A.0111s0170 Salix purpurea SapurV1A.0111s0170 N 0.798
SapurV1A.2210s0020 Salix purpurea SapurV1A.2210s0020 N 0.798
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.797
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.797
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.797
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.797
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.797
30061.m000294 Ricinus communis 30061.m000294 N 0.797
mgf022319m Mimulus guttatus mgf022319m N 0.797
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.794
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.794
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.794
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.794
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.794
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.792
MDP0000144266 Malus domestica MDP0000144266 N 0.792
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.792
Bo5g081360 Brassica oleracea Bo5g081360 N 0.791
Cla008675 Citrullus lanatus Cla008675 N 0.791
29908.m006047 Ricinus communis 29908.m006047 N 0.790
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.790
MDP0000142494 Malus domestica MDP0000142494 N 0.790
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.787
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.787
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.787
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.787
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.787
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.787
OB08G26650 Oryza brachyantha OB08G26650 N 0.787
OBART08G19670 Oryza barthii OBART08G19670 N 0.787
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.787
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.787
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.787
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.787
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.787
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.787
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.787
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.787
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.787
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.787
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.787
OS08G0504000 Oryza sativa OS08G0504000 N 0.787
OS09G0485600 Oryza sativa OS09G0485600 N 0.787
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.787
Si013819m.g Setaria italica Si013819m.g N 0.787
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.787
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.787
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.784
TCM_034881 Theobroma cacao TCM_034881 N 0.784
TT1 Vitis vinifera VIT_18s0001g05860 N 0.784
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.784
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.784
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.784
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.784
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.784
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.784
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.784
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.784
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.784
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.784
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.781
F775_14972 Aegilops tauschii F775_14972 N 0.781
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.781
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.781
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.781
Si029897m.g Setaria italica Si029897m.g N 0.781
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.781
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.781
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.781
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.781
MDP0000573922 Malus domestica MDP0000573922 N 0.781
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.781
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.778
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.778
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.778
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.778
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.778
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.778
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.778
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.778
TCM_041441 Theobroma cacao TCM_041441 N 0.778
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.778
Ca_07051 Cicer arietinum Ca_07051 N 0.778
Pm001374 Prunus mume Pm001374 N 0.778
30055.m001542 Ricinus communis 30055.m001542 N 0.778
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.778
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.778
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.778
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.778
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.778
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.778
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.778
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.778
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.778
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.778
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.778
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.778
MDP0000131949 Malus domestica MDP0000131949 N 0.778
MDP0000300013 Malus domestica MDP0000300013 N 0.778
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.778
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.778
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.778
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.774
WIP2 Arabidopsis thaliana AT3G57670 N 0.774
Bo4g111000 Brassica oleracea Bo4g111000 N 0.774
Bo6g073120 Brassica oleracea Bo6g073120 N 0.774
Bo8g092070 Brassica oleracea Bo8g092070 N 0.774
Bra003295 Brassica rapa Bra003295 N 0.774
Bra014612 Brassica rapa Bra014612 N 0.774
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.774
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.774
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.774
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.774
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.774
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.774
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.774
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.774
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.774
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.774
TCM_024788 Theobroma cacao TCM_024788 N 0.774
NTT Vitis vinifera VIT_08s0007g08070 N 0.774
Ca_07269 Cicer arietinum Ca_07269 N 0.774
Cla008187 Citrullus lanatus Cla008187 N 0.774
Pm025853 Prunus mume Pm025853 N 0.774
27810.m000651 Ricinus communis 27810.m000651 N 0.774
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.774
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.774
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.774
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.774
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.774
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.774
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.774
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.774
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.774
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.774
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.774
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.774
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.774
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.774
MDP0000601705 Malus domestica MDP0000601705 N 0.774
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.774
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.774
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.774
PK03705.1 Cannabis sativa PK03705.1 N 0.774
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.774
Ca_16482 Cicer arietinum Ca_16482 N 0.773
Bra007346 Brassica rapa Bra007346 N 0.772
PK05257.1 Cannabis sativa PK05257.1 N 0.772
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.772
Bo5g008880 Brassica oleracea Bo5g008880 N 0.769
Bo8g112550 Brassica oleracea Bo8g112550 N 0.769
Bra018638 Brassica rapa Bra018638 N 0.769
Bra031621 Brassica rapa Bra031621 N 0.769
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.769
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.769
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.768
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.767
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.767
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.767
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.767
Pm000471 Prunus mume Pm000471 N 0.767
mgf019910m Mimulus guttatus mgf019910m N 0.767
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.767
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.767
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.767
MDP0000403797 Malus domestica MDP0000403797 N 0.767
MDP0000580545 Malus domestica MDP0000580545 N 0.767
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.767
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.765
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.764
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.764
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.764
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.764
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.764
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.764
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.764
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.764
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.764
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.764
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.764
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.764
TCM_011858 Theobroma cacao TCM_011858 N 0.764
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.764
Ca_08435 Cicer arietinum Ca_08435 N 0.764
Ca_24699 Cicer arietinum Ca_24699 N 0.764
Cla000184 Citrullus lanatus Cla000184 N 0.764
Cla002714 Citrullus lanatus Cla002714 N 0.764
Pm029018 Prunus mume Pm029018 N 0.764
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.764
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.764
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.764
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.764
mgf022981m Mimulus guttatus mgf022981m N 0.764
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.764
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.764
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.764
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.764
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.764
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.764
MDP0000303483 Malus domestica MDP0000303483 N 0.764
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.764
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.764
WIP3 Arabidopsis thaliana AT1G08290 N 0.759
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N 0.759
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.759
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.759
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.759
WIP6 Arabidopsis thaliana AT1G13290 N 0.758
Bo5g015200 Brassica oleracea Bo5g015200 N 0.758
Bra019822 Brassica rapa Bra019822 N 0.758
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.758
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.758
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.758
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.758
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.758
OBART06G20890 Oryza barthii OBART06G20890 N 0.758
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.758
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.758
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.758
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.758
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.758
TCM_040610 Theobroma cacao TCM_040610 N 0.758
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.758
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.758
Ca_21713 Cicer arietinum Ca_21713 N 0.758
30169.m006417 Ricinus communis 30169.m006417 N 0.758
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.758
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.758
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.758
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.758
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.758
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.758
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.758
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.758
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.758